Detailed information of OS493_036048-T1 in Lophelia pertusa

Genomic Location: scaffold_345:172894...230950
NR annotation: KAJ7376225.1, hypothetical protein OS493_036048 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q14690Protein RRP5 homolog OS=Homo sapiens OX=9606 GN=PDCD11 PE=1 SV=3
A7MB10Protein RRP5 homolog OS=Bos taurus OX=9913 GN=PDCD11 PE=2 SV=1
Q6NS46Protein RRP5 homolog OS=Mus musculus OX=10090 GN=Pdcd11 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00575S1S1 RNA binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003029DomainS1 domainInterproscan
IPR003107RepeatHAT (Half-A-TPR) repeatInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR048058DomainrRNA biogenesis protein RRP5, S1 domain, eleventh repeatInterproscan
IPR045209FamilyrRNA biogenesis protein Rrp5Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23270PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14792RRP5, PDCD11; rRNA biogenesis protein RRP5-Ribosome biogenesisko03009deepkoala

Expression pattern
 Expression trend for OS493_036048-T1 global co-expression network
TOP