Detailed information of OS493_036144-T1 in Lophelia pertusa

Genomic Location: scaffold_349:172748...217471
NR annotation: KAJ7388705.1, hypothetical protein OS493_036144 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q01082Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens OX=9606 GN=SPTBN1 PE=1 SV=2
Q62261Spectrin beta chain, non-erythrocytic 1 OS=Mus musculus OX=10090 GN=Sptbn1 PE=1 SV=2
Q00963Spectrin beta chain OS=Drosophila melanogaster OX=7227 GN=beta-Spec PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00307CHCalponin homology (CH) domainDomainInterproscan
PF00435SpectrinSpectrin repeatDomainInterproscan
PF00169PHPH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018159RepeatSpectrin/alpha-actininInterproscan
IPR036872Homologous_superfamilyCH domain superfamilyInterproscan
IPR001715DomainCalponin homology domainInterproscan
IPR001605DomainPleckstrin homology domain, spectrin-typeInterproscan
IPR002017RepeatSpectrin repeatInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR001849DomainPleckstrin homology domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11915SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005543Molecular Functionphospholipid bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0030036Biological Processactin cytoskeleton organizationInterproscan
GO:0030054Cellular Componentcell junctionInterproscan
GO:0030864Cellular Componentcortical actin cytoskeletonInterproscan
GO:0042995Cellular Componentcell projectionInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06115SPTBN1_4_5; spectrin beta, non-erythrocytic 1/4/5-Cytoskeleton proteinsko04812deepkoala

Expression pattern
 Expression trend for OS493_036144-T1 global co-expression network
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