Gene detail

Detailed information of OS493_036634-T1 in Lophelia pertusa

Genomic Location: scaffold_375:229090...249669
NR annotation: KAJ7376159.1, hypothetical protein OS493_036634, partial [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_036634-T1

ATGAATGTAAAACATGCACATGATGGTTTGCCTGGTCAGCCATCTTCACCCACTGCAGATTCTGTTTCAAAACATGAAATTGACATCTCGTGGACTGCACCTGCTGATACAGGTGACGGAATTACAGGGTACACTGTTCAGTGGCAAGTCATTGGAAAATCAACCCAAACACAAAAAGTGGTTACAGGCGCAAGCAGGTCAGCAAGACTTCCTGTAACACCATACACTTGGTATGATATCCAAGTGAGAACGTTCAATGACAAGGGACATGGCCCTTGGTCAGTGGCACTGAGAGTGATGTCTAAAGAATCTGTACCCTCTGCTGCTCCTGGAAACTTCAGATTAGGGTCCAGTGCCGCTCTTTCACTGGACATATCATGGGATGCAATACCTGCAGATCAGCAGCAAGGGAAGCTTTTGGGTTACAAAATCTACTACAAGATAGATGGATCTGCAGCAGAACATAACAAGATTGTTGGGCCAACTGAGGTGACGTACAAACTGACAGGACTCGAGTATGCAAGCTATATTCTCAGAATGGCCGGATACACTGCTGTTGGTGTTGGCAAATCCACTGGGTCACTGACAAAAGTGCCCAATGAAGGAGCTCCAACGCCTCCGAGAAACGTCAAGCTTGTTGTAGAGTCGTCAAAATCAATCAAGGCATCCTGGCTTGCACCCCTAAAGTTGAATGGTGTTTTCGACCGTTATGGGATAATGTATGGCACAGATAGAGGCAAGCTGGATACAACGGTATATACAACAACCACAGAGTACTCAATATCTCCCTGGAGGAATATAAAGAATATTTTGTTGCAGTGTTTGCTGAAACATCCGTTTCAGGATCCCAATCTAATATTGTACAGGCCAAGACCTCTGAAGATGTTCTCCCCTGTCATAAATGCACAAGAAACTAAAGCCGAGGATGCTCACACCATACGAGTCAAGTGGGATGAAATAAGTCAAAATGACCAAAATGGCGTCATACTTGGTTATAATGTGTACTACAATGAACGAGGACAAGGTAACATGATCATCCAGGGCACAACTGACACAGACACAATTATTAGAGGATTAAAGCCATTTACAGAGTACTGCATCAAAGTTGAAGGACACACCAAGGTCGGGTCATCACCACGAGGGAGCTGTACTTATGTTAAAACATTGGAATCAGGCCCAAGTCATCCACAGAATGTTAAAGTTCGAGCAATGTCCTCCATGTCAATTCGCGTGACGTGGGAGGAGCCAGCGCAGTTAAATGGAATCATTTCAAGGTATATCATTTCTTACGGAATAAATAAAGACGTCCAGGTTATCGAAAAAGAAGTGACAGGGCAGACACTGGAACATGTTCTAGATGGTTTGAACAAGTTTACAACTTACTTCATCAAAGTCAGGGGCAGAACGTCAGAGGCGGGAAATGCTTCGGTGGTATTGAATGCGACAACGTTTGAGGACAGTCCTGGACCTCCGAAGCAATTCAATGGGCAGGTCATATCAAAGACGGACATTTACTTATCCTGGAAAGATCCTGTTAAATCCAATGGGATTGTAAGGTTTTACTACATCAGGATTTACGATACCAAAACTGGCCAACAGGTTAAAAATCTTGTAAACAAGACCGCTGTCAAACTGGCTTTTATACAACGGCAACTGATATCCGGCCTGAAACCTTTTACAAATTACACCTTCACAATCCAGGCTGTTACCATCAAGCCTGGAGAAATGGCTAACTTCACTGCTAGGACATATGAAGGAGAAGTGACAACTGAGCCAGTAACAACAGAAACAAAGGATACTAATACAGAATCAAGCACGGGCTTCCCACAATCCAAACAACAGCGATTTATTCAAGAGCCTTATAAACTGGCAATTAACAACGTAAAGGATCTACACAAGCTTGATGATAATGGTCTGATACCGACTGAGAACACCATCAAACATTCTCTTACTGAGAAAGCTACCAGTGGTGAGTCCTATTTGATTGTAATCGTCTTGATATTGACAATCCTCATTTTGGTTATTTTTATCGTTTTGGGGATCATTTTGGGTGTGCTGTTTGTCCGGCGACGTCGAAGGCTCAAGAAACAAGAAATGACAACTGAACCAGTAACACCACAAGCAAAGGTTACTAACACAGAATCAAGTACGGGACTTCCCACAACCCAAACGTTGACGGTTACTAAAGTGACACATTCAATATTATCCACACAAATCCAGTCTACTAATGGTCTCTCTACAACAGTGGTTTATTCAAGAGAAATGACAACTGAACCAGTAACACCACAAGCAAAGGATACTAACACAGAATCAAGCACGGGAATTCCCACAACCCAAACGTCGACGGTTATTACTCAAGTTATACATTCAATATTATCCACACAAATCCAGTCTACTAATGGTCTCTCTACAACAGTGGTTTATCCAAGAGTGATACCGACCGAGAACACCGCCAACGATTCGCTTACTGAGGAAGCTACCAGTG

Transcript

OS493_036634-T1

Protein

Uniprot

Uniprot term	Description
Q58EX2	Protein sidekick-2 OS=Homo sapiens OX=9606 GN=SDK2 PE=1 SV=3
Q6V4S5	Protein sidekick-2 OS=Mus musculus OX=10090 GN=Sdk2 PE=1 SV=1
Q8AV57	Protein sidekick-2 OS=Gallus gallus OX=9031 GN=SDK2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050713	Family	Receptor-type Tyrosine-protein Phosphatases/Ushers	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46957	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

Expression pattern

Expression trend for OS493_036634-T1 global co-expression network