Detailed information of OS493_037211-T1 in Lophelia pertusa

Genomic Location: scaffold_407:172744...181670
NR annotation: KAJ7351029.1, DNA-directed RNA polymerase II subunit RPB1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
G3MZY8DNA-directed RNA polymerase II subunit RPB1 OS=Bos taurus OX=9913 GN=POLR2A PE=1 SV=2
P11414DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=POLR2A PE=1 SV=2
P24928DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00623RNA_pol_Rpb1_2RNA polymerase Rpb1, domain 2DomainInterproscan
PF04997RNA_pol_Rpb1_1RNA polymerase Rpb1, domain 1DomainInterproscan
PF04998RNA_pol_Rpb1_5RNA polymerase Rpb1, domain 5DomainInterproscan
PF04992RNA_pol_Rpb1_6RNA polymerase Rpb1, domain 6DomainInterproscan
PF04983RNA_pol_Rpb1_3RNA polymerase Rpb1, domain 3DomainInterproscan
PF05000RNA_pol_Rpb1_4RNA polymerase Rpb1, domain 4DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000722DomainRNA polymerase, alpha subunitInterproscan
IPR007080DomainRNA polymerase Rpb1, domain 1Interproscan
IPR007081DomainRNA polymerase Rpb1, domain 5Interproscan
IPR007075DomainRNA polymerase Rpb1, domain 6Interproscan
IPR007066DomainRNA polymerase Rpb1, domain 3Interproscan
IPR006592DomainRNA polymerase, N-terminalInterproscan
IPR042102Homologous_superfamilyRNA polymerase Rpb1, domain 3 superfamilyInterproscan
IPR045867FamilyDNA-directed RNA polymerase, subunit beta-primeInterproscan
IPR007083DomainRNA polymerase Rpb1, domain 4Interproscan
IPR038120Homologous_superfamilyRNA polymerase Rpb1, funnel domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19376DNA-DIRECTED RNA POLYMERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0001055Molecular FunctionRNA polymerase II activityInterproscan
GO:0005665Cellular ComponentRNA polymerase II, core complexInterproscan

Expression pattern
 Expression trend for OS493_037211-T1 global co-expression network
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