Gene detail

Detailed information of OS493_038030-T1 in Lophelia pertusa

Genomic Location: scaffold_494:57148...73504
NR annotation: KAJ7381954.1, positive regulation of protein localization to cilium [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_038030-T1

ATGGCGACTGCAGTAGGATTTCTTCAAAGTCCGCTCGTCGTTTGGGCTAATAATACTTTCAAGGCAAGTGCACTGATAGAGTCCATAACTGACTTAGCTGATGGCGTATTTCTCAACGAAATTATGATGGACATCGATCCAACTTATTTCACGTTGACGCGTATTCATCAAAATGTTTACGGAGATGTGAATTTGCGGATGCAGAATTTGGACACACTTGTCAAACACTTGAAAAGATATTACCAGGATAAACTTCAACAGCTTGTTTTATTAAGAATTCCAGATGTTGTTACGATAGCTCGAGAACCACAAAGTGATGAAGCAGCAGAAGAACTGAACAAAATCCTTTTGTTAATGTTGGGTTGTGCAGTCCAGTGTGATAATAAGGAGCATTTCATTGAAAGAATAAAGGAAATGGACCTTGAAGTTCAAAAATCATTAGTGGAATATATTCAACAGATCACTGACAACACAGACAATGTACTTACCTTCCGAGCTCATGACTTGTCTGAATACCCTGCAGACCAGCTGTTGCTTTATGCAGAAAATATGTTTTACCACATCACCCAGCTTTCCGAGGATAGAGACAACTGTGTTGGAATGGTGTCACATTTGTCGTATGAAAGAGATGCATTACTTCGTGATAGTGAGAGCAAGAATCGCGGTGCGTTTTCACCTCCACCAAGCCCAGCTGTCCGCCACAATAAAGAGTTACCATCTACACATGCTAATAAGGAGAAGATCAGACTCCTGACAGAAGAAATAGAGGAAAAGAATGTTGCCCTCTCAGAACTGCGAGATGAACTGATTGCCAGCAAAAAGAGTCTGGAAACACTCAGGCAGGAGAATAAAAGTTTGTCTCAAGATGCTCGATGGGTTAAAGCTTACAGAGACGAGATTGATGCCTTGAAGTCGAAGACGGATAAAGTTGATAGGCTCGAGGCTGATAACCACAGATTTAAAGAAAAACTGCGGGATTTGGATTACTACAAGAAGAGAGCAGAGGAACTGAAAGAACAGAATGAACTGTTATATGAAACAAGAGTTGTACTGGAAGAACAACTAACAGGACTCAACTCTAAGGAAGAAAGAATTGAAATCTTGGAGGAAGAAAATAAAAAACTGAAGTCCCACATTCATCATCTAGCAGAGGAAAGACAGTTTGACCAACTCAAGCTCAAGGAAGTAATGGAGGAAAATGCTCAATTGATCGTCGACAAGCAGAACAGTATGGCTGAAGCGGCCTCATTAACATCAGAACTTGACGCACTACGAGGAAAGAAGTCTCCAGGATCTACAACTTTTGCAAGTGAATATAGCGAATCCAGCTCGATAGAAGTGCTTCGAATGCAGAGGGAAAACCAACAGCTACGGAAAACGATTGACGAGCTCAAACACTCTGGACAAAGGATCATCGAATTGCGAGCTGAAAATGAACAGCTGCAGAATGCGACCTTGGACGGAAAAACAACCGTGTTCAACCTAAACGAGGAACTTGCCAGATTGAAAGCACGGGGCCTGCAACAAGAGAACGACTTGAACAAACTGCGCTCCATCGCGAAACGACAGCAAGAAGAGTTGAAAACGTCTGTAGACAATGTGCTGAACTTATCTGGGGAGCTGAGAGAGAAAGATGTAGAAATGTCACAAGTTGAAGAACAAAGTTTACTTAATTTCCAACTTTCAGAGGAAAAAGTCCAGGATCTTGTGAGCATGGCTGATGAGCTCAAAGAAAAGGAGGCTAAAATTACACAGTTAAACCAAGAAGCTGAGCAGAAACAGGAAAAAATAACAGAACTCAGCCGGCTGGCGGAGGAGAGAGAATCAAACGTGATGGAACTGTATGAACGAGTGAAAGAAAACGAACTGGAAATAACAAAGCTCGCAGAACAATCTGAGAATAAGAACGAGAGGATCACAGAGTTGACCAAGTTGACACAGTTAAAAGAGGAGAAACTTGCCGACTTGAACTTGGAATTGCGAGAGCGAAAGAAGGAGATTTCTGAGTTGCAGGATTTGTTGAAGGAAAAGGAAGACGTCGTTGCGAAGATAAGTCAAAAGATCAAAGTCAGAGAAGAGACTATTGCGGAGTTAAAAGAGAGCATCGAGGCAAAGATAGAAGGCTGCAGAGCCTGGAGAAAAGGTAAGTCGGTGCCATGTGGACTGAGGAAACGTTTCAAAGACGCGTGGAAGATGCGGTGGCCTAGTGGTTAG

Transcript

OS493_038030-T1

Protein

Uniprot

Uniprot term	Description
A0A2R8QCI3	Protein Daple OS=Danio rerio OX=7955 GN=ccdc88c PE=2 SV=1
Q6VGS5	Protein Daple OS=Mus musculus OX=10090 GN=Ccdc88c PE=1 SV=1
Q9P219	Protein Daple OS=Homo sapiens OX=9606 GN=CCDC88C PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19047	HOOK_N	HOOK domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR043936	Domain	HOOK, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18947	HOOK PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0030705	Biological Process	cytoskeleton-dependent intracellular transport	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005813	Cellular Component	centrosome	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0031122	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0051959	Molecular Function	dynein light intermediate chain binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16536	HOOK3; protein HOOK3	-	Cytoskeleton proteins	ko04812	deepkoala

Expression pattern

Expression trend for OS493_038030-T1 global co-expression network