Gene detail

Detailed information of PFX11207.1 in Stylophora pistillata

Genomic Location: Spis.scaffold3199:809...2282
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00849 all species →	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan
PF07722 all species →	Peptidase_C26	Peptidase C26	Domain	Interproscan
PF01479 all species →	S4	S4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000748 all species →	Family	Pseudouridine synthase, RsuA/RluB/E/F	Interproscan
IPR018496 all species →	Conserved_site	Pseudouridine synthase, RsuA/RluB/E/F, conserved site	Interproscan
IPR029062 all species →	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR042092 all species →	Homologous_superfamily	Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain	Interproscan
IPR050343 all species →	Family	Ribosomal RNA Pseudouridine Synthase RsuA	Interproscan
IPR006145 all species →	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR020094 all species →	Homologous_superfamily	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal	Interproscan
IPR036986 all species →	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan
IPR002942 all species →	Domain	RNA-binding S4 domain	Interproscan
IPR011697 all species →	Family	Peptidase C26	Interproscan
IPR020103 all species →	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47683 all species →	PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0009451 all species →	Biological Process	RNA modification	Interproscan
GO:0016866 all species →	Molecular Function	intramolecular transferase activity	Interproscan
GO:0009982 all species →	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX11207.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.