Gene detail

Detailed information of PFX11215.1 in Stylophora pistillata

Genomic Location: Spis.scaffold3181:144...2885
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

fmt

ATGCGTCAAGCGCGTTCTGGAGAAGAATTGGAGATTAAGCGTACTGAACATGATATCCCTATTAACTGGGTTTTTTGGGGAATTGTTACATTAATTGCACCTTTGGTAGGTCTTTTTTACTATGTTGTTGCGGGGCAAGAGCTCATGATCCCAGCTTCTCAGTATTGGCTCTCTATAGGGGCTATTACAGCGTTTTCCGTTGTCATTGGTTTTGTTGCTTCCGCTATCGGAGGATATATGTCAGGCCTTTTAGGGTCCTCCAACACACCGATTTCTGGGGTAACGATCATGGTCATTTTGTTGGTTTCGGTTATGCTTTACTCTCTTCTTGGGGGCGCTGAATCTGCAACTTTAGAGACATCAACAGCGATTGGTCTTGCTTCCGTTGCAATTATTATTGGCGCTGTTGTCGCTTGTGCTGCTGCTGTGAGCTGTGACAACCTTCAAGATCTTAAAGCAGGTCTTCTTGTTGGTGCGACCCCTTGGAAGCAACAGGTTATGCTTCTTGTAGGTGTTATTGCAGGATCGTTAATTATGGGACCTGTGCTCCAAGTTCTTTTTGAAGCGTATGGTATTGGTGGGGTTTTCCCTCGAGAAGGTATGGATCCTTCTCAATCATTGGGAGCTCCAAAAGCGGCTATTATGGCGGACATTTCTAGAGGGGTTTTTGCACAGTCTCTTGATTGGACAATGATTCTTCTTGGTGGAGCTTTAGGGATTGCTTTGGTGATTTTTGATGAAATTTTGAAAGCACGTGGCTCTTTTTGGCGCTTCCCTGCAATTGCTTTAGCGATTGGGATCTACATGCCTTTAGATGTTACCGTTCCTCTATTCTTTGGTGGACTTATTTGGCTCATGGCTGAAAAACGTTTAGATCGCCAAAGAGAAAAACTCGGTGTGGATTATACGCTCGCAGCAAACTTTGCAAGGCGGCGCGGTCTTCTATTTTCTTCTGGGCTAATCGCAGGAGAAGCCATTATGGAACCTCATCCACTTTTACGCCAAAAGGCTCAGCCTGTTGACACCATCAATGATGATTTAAAATCATTCATTGAGGATATGTTTATAACAATGGAAGCAGAAGATGGAATTGGGTTGGCTGCGAACCAAGTGGGCATTTTAAAACGCGTGATTGTGATTGATGTTCCTCATGAAGTCCCTGCTTTGGAAGCTTTGTACCAAGCGGGCCATGAAATCATCGCCGTTTATACGCAACCTCCTAGACCTGCAGGGCGCGGCCATAAAGTTCAAAAAAGCCCTATCCATGTTTTCGCAGAAAACCTTGATATTCCAATTTACACGCCGAAAAAATTTCAAGAAGGAGAAATTCAGGAACTGCAATCTCATAGAGCTGAAGTTGCAGTTGTTGTCGCTTATGGACTTATTTTACCGCGTGCTGCTTTAGATTGTTTTCCTTACGGATCTTTAAATATTCACGCTTCTTTGTTGCCTCGATGGCGTGGAGCAGCCCCGATTCAAAGATGTATAGAAGCAGGAGATCAAAAGTCTGGTATTACCATTATGCAGATGGAGGAAGGCCTCGATTCAGGGCCAATGCTTTTAAAAGAAGAAATACCTTTGAACCTTCAAATAACAGGGGGAGAATTGCATGATATTTTGTCCACCATGGGAGCTTCTTTAATTGTAAATGCTCTTCAACAATTGGAAAACGGAAAAATAAATCCTATTCTCCAAGATGATACGCAGGTGACATATGCTTATAAATTATCTCCAAAAGAAGGAAAAATTCCCTTGTTGAAGTCTGCAGAAGAAATTGAACAACGTATTCGTGCCTTTACACCCTGGCCAGGGAACTGGTGCCTTTTGGAGGGAGAGCGGATTAAAATTTTAGAAGCCCATATTATAAAAGAAAAATTCATAAATGACTCAAGTTCGAAGGGACAACCAGGGCAAATTATTTCTACAAAACCTTTTATAGTTGCTTGTGGAAAAGGATTTTTAGAGATTAACAAGGTACAAAAACCTGGGAAAAAGCCTATGGCAGTGGAAGATTTTATGAATGGTTTCCCTATTTCTATTGGAACAATTTTACGCTAA

Transcript

rna-Spis25194_mrna

ATGCGTCAAGCGCGTTCTGGAGAAGAATTGGAGATTAAGCGTACTGAACATGATATCCCTATTAACTGGGTTTTTTGGGGAATTGTTACATTAATTGCACCTTTGGTAGGTCTTTTTTACTATGTTGTTGCGGGGCAAGAGCTCATGATCCCAGCTTCTCAGTATTGGCTCTCTATAGGGGCTATTACAGCGTTTTCCGTTGTCATTGGTTTTGTTGCTTCCGCTATCGGAGGATATATGTCAGGCCTTTTAGGGTCCTCCAACACACCGATTTCTGGGGTAACGATCatggtcattttgttggtttCGGTTATGCTTTACTCTCTTCTTGGGGGCGCTGAATCTGCAACTTTAGAGACATCAACAGCGATTGGTCTTGCTTCCGTTGCAATTATTATTGGCGCTGTTGTCGCTTGTGCTGCTGCTGTGAGCTGTGACAACCTTCAAGATCTTAAAGCAGGTCTTCTTGTTGGTGCGACCCCTTGGAAGCAACAGGTTATGCTTCTTGTAGGTGTTATTGCAGGATCGTTAATTATGGGACCTGTGCTCCAAGTTCTTTTTGAAGCGTATGGTATTGGTGGGGTTTTCCCTCGAGAAGGTATGGATCCTTCTCAATCATTGGGAGCTCCAAAAGCGGCTATTATGGCGGACATTTCTAGAGGGGTTTTTGCACAGTCTCTTGATTGGACAATGATTCTTCTTGGTGGAGCTTTAGGGATTGCTTTGGtgatttttgatgaaattttgaaagcaCGTGGCTCTTTTTGGCGCTTCCCTGCAATTGCTTTAGCGATTGGGATCTACATGCCTTTAGATGTTACCGTTCCTCTATTCTTTGGTGGACTTATTTGGCTCATGGCTGAAAAACGTTTAGATCGCCAAAGAGAAAAACTCGGTGTGGATTATACGCTCGCAGCAAACTTTGCAAGGCGGCGCGGTCTTCTATTTTCTTCTGGGCTAATCGCAGGAGAAGCCATTATGGAACCTCATCCACTTTTACGCCAAAAGGCTCAGCCTGTTGACACCATCAATGatgatttaaaatcattcatTGAGGATATGTTTATAACAATGGAAGCAGAAGATGGAATTGGGTTGGCTGCGAACCAAGTGGGCATTTTAAAACGCGTGATTGTGATTGATGTTCCTCATGAAGTCCCTGCTTTGGAAGCTTTGTACCAAGCGGGCCATGAAATCATCGCCGTTTATACGCAACCTCCTAGACCTGCAGGGCGCGGCCATAAAGTTCAAAAAAGCCCTATCCATGTTTTCGCAGAAAACCTTGATATTCCAATTTACACGccgaaaaaatttcaagaaggAGAAATTCAGGAACTGCAATCTCATAGAGCTGAAGTTGCAGTTGTTGTCGCTTATGGACTTATTTTACCGCGTGCTGCTTTAGATTGTTTTCCTTACGGATCTTTAAATATTCACGCTTCTTTGTTGCCTCGATGGCGTGGAGCAGCCCCGATTCAAAGATGTATAGAAGCAGGAGATCAAAAGTCTGGTATTACCATTATGCAGATGGAGGAAGGCCTCGATTCAGGGCCAAtgcttttaaaagaagaaataccTTTGAACCTTCAAATAACAGGGGGAGAATTGCATGATATTTTGTCCACCATGGGAGCTTCTTTAATTGTAAATGCTCTTCAACAATTGGAAAACGGAAAAATAAATCCTATTCTCCAAGATGATACGCAGGTGACATATGCTTATAAATTATCtccaaaagaaggaaaaattccCTTGTTGAAGTCTGCAGAAGAAATTGAACAACGTATTCGTGCCTTTACACCCTGGCCAGGGAACTGGTGCCTTTTGGAGGGAGAGCGGATTAAAATTTTAGAAGCCCatattataaaagaaaaattcataaaTGACTCAAGTTCGAAGGGACAACCAGGGCAAATTATTTCTACAAAACCTTTTATAGTTGCTTGTGGAAAAGGATTTTTAGAGATTAACAAGGTACAAAAACCTGGGAAAAAGCCTATGGCAGTGGAAGATTTTATGAATGGTTTCCCTATTTCTATTGGAACAATTTTACGCTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02911 all species →	Formyl_trans_C	Formyl transferase, C-terminal domain	Domain	Interproscan
PF00551 all species →	Formyl_trans_N	Formyl transferase	Domain	Interproscan
PF03169 all species →	OPT	OPT oligopeptide transporter protein	Family	Interproscan
PF01327 all species →	Pep_deformylase	Polypeptide deformylase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005793 all species →	Domain	Formyl transferase, C-terminal	Interproscan
IPR011034 all species →	Homologous_superfamily	Formyl transferase-like, C-terminal domain superfamily	Interproscan
IPR036821 all species →	Homologous_superfamily	Peptide deformylase superfamily	Interproscan
IPR002376 all species →	Domain	Formyl transferase, N-terminal	Interproscan
IPR004814 all species →	Family	Oligopeptide transporter OPT	Interproscan
IPR036477 all species →	Homologous_superfamily	Formyl transferase, N-terminal domain superfamily	Interproscan
IPR041711 all species →	Domain	Methionyl-tRNA formyltransferase, N-terminal domain	Interproscan
IPR004813 all species →	Family	Oligopeptide transporter, OPT superfamily	Interproscan
IPR005794 all species →	Family	Methionyl-tRNA formyltransferase	Interproscan
IPR023635 all species →	Family	Peptide deformylase	Interproscan
IPR044135 all species →	Domain	Methionyl-tRNA formyltransferase, C-terminal domain	Interproscan
IPR001555 all species →	Active_site	Phosphoribosylglycinamide formyltransferase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11138 all species →	METHIONYL-TRNA FORMYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004479 all species →	Molecular Function	methionyl-tRNA formyltransferase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0071951 all species →	Biological Process	conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0035673 all species →	Molecular Function	oligopeptide transmembrane transporter activity	Interproscan
GO:0042586 all species →	Molecular Function	peptide deformylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX11215.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.