Genomic Location: Spis.scaffold3017:223...2117
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families
| CDS |
| Ndufaf7 |
| Transcript |
| rna-Spis25113_mrna |
| Protein |
| PFX11266.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003078 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02636 all species → | Methyltransf_28 | Putative S-adenosyl-L-methionine-dependent methyltransferase | Family | Interproscan |
| PF02578 all species → | Cu-oxidase_4 | Multi-copper polyphenol oxidoreductase laccase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR003788 all species → | Family | Protein arginine methyltransferase NDUFAF7 | Interproscan |
| IPR003730 all species → | Family | Multi-copper polyphenol oxidoreductase | Interproscan |
| IPR011324 all species → | Homologous_superfamily | Cytotoxic necrotizing factor-like, catalytic | Interproscan |
| IPR038371 all species → | Homologous_superfamily | Multi-copper polyphenol oxidoreductase superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12049 all species → | UNCHARACTERIZED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0035243 all species → | Molecular Function | protein-arginine omega-N symmetric methyltransferase activity | Interproscan |
PFX11266.1.Genes whose expression across the transcriptome samples of Stylophora pistillata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Stylophora pistillata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
| Dataset | Tissue / stage | Cells | Cell types | This gene | Marker of |
|---|---|---|---|---|---|
| SPIST_whole_adult | Whole adults · Adult tissues/organs | 13,896 | 25 | not in this dataset | – |
A gene is in viewer when the dataset ships a per-cell expression vector for it; marker only means it is in the dataset’s ranked marker table but no vector was exported, so the atlas cannot draw it; not in this dataset means the dataset’s own gene-ID table does not list it, so no expression claim can be made for that dataset. unmapped is deliberately weaker still: the dataset has no gene-ID table on CnidoSite yet, so nothing is claimed in either direction. Where markers are listed, the numbers are log2 fold change and the percentage of cells of that type in which the gene was detected.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
