Gene detail

Detailed information of PFX11404.1 in Stylophora pistillata

Genomic Location: Spis.scaffold2597:2...3562
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

IRC3

AAACTAGCTCAAAAAGCAGGGGTAAGCCGTGCTACAGCCGAACAATACGATGCTATTCAACGTAAAGGCACTGAAGAGCAAAAAGCCCAAGTTGACGCTGGCGAGTCCAGTATTAAGAAAGTCTACACTCAAATACAGCGAGCCGAACGTTTAAAAAAGAATCAAGCTACAGAATGGCCAGAAGGTAAATACAGAATAATATACGCAGACCCACCTTGGAAGTATGGAGATGAACGTTCTGGTATGGGCGGTGCTGTTGATCAGTATGATCTTATGGAATTGGGAGATATAAAAGCATTGCCAGTTGCGGACTTAGCAGAAGATGATGCAGTATTATTTATGTGGGCTACTGCTCCGTTAATGAGAGAGGCGTGGGAAGTTCTAGATGCTTGGGGCTTTAAATACAAGACTCAATTGATATGGAATAAGGGCAAGGGACCCGTGGAATTAGATAAATTAGCTCAATCAGGTGGTTTTAAAGATGCTGATGATTTAATGGAATATTACCAGCAGGAAACACTAGACATGTGTTTTAGGAATCTACAAGAAGCAGCAGATCGAGATAAGAGCATTGCAGCACTAAAGGAGCATGGAAACACAGTATCAGTTGCGTTTACAGGTGCAGGGAAGACTATTTGCTTATCTGCAGTTATCAAGAAATTGGCTTCAGAGAAGGCTAATCTCAAAACTCTAGTTATAGCCCATAGAGACGAAATCACTTACCAGAACCAAGATAAATTCTTGAAAGTAGCTCCCAATATTAGTACATCATTATTTAATGGTGATACAAAGGACTGGAGCGGTCAAACTGTATTTGGCATGATTCAGTCGTTAAGCAGAGAAAACGCTCTTGAGGAGCTTCCTACTTTCGATTTAGTGGTAATAGACGAAGCTCACCACGTAACTGCTGAAACATACAGGAAGGTTATAGACTGCGTTACTAAAAATAATCCTAATGCTAAAATATTTGGCGTTACTGCTACTCCAATGCGGGGGGATAAGAATAACATTGGCGTAATATTCAGTAATTGTGCAGACCAGATTAGTTTACCAGAACTTATAGGTAGCGGTCATTTAGTACCACCAGTAACCTATCGAATAGATACTGGCGAAACTGGTAAAAAGCTAGAAGCGATTCACTTGCGTAAAGGTTCTGATTACAACGATAAGGAAATAGCAGATATTTTAGATACTGTGCCACTAAATACAAGAGTAGTGGAAGAGTGGAAGGCTAAAGCTGGAAATAGGAAAACAGTAATATTCTGCTCTAACATTGAACATGCTTCCAATGTAACTGACGCTTTTAAACATGCAGGCGTAAAAGCAGAACTAGTAACTAGCTTAATGACTAGTGAGTCAAGGCAGCAAGCCTTACAAGATTTAGAAAGCGGTAAAGTGCAAGTTTTAGTCAATGTAGCTATTCTAACTGAAGGTTGGGACTACCCACCTATCTCATGTGTAGTATTGCTTCGCTGTAGCTCTTACAAGTCTACCATGATACAGATGATAGGCAGGGGTTTGCGTCCTATTGATGCAAGCATTTACCCAAATGATAGCAAAACAGACTGTATCGTATTAGACTTTGGCATATCTACTATCTTGCATGGTAATTTAGAGCAAGAAATTAAGCTAAAAGAAGAATTAGCCAAAGAAAGAGATACTTGCCCAGACTGCAAGAAGAAAATACCTTTAAGTGCTGAAGTTTGTCCGTTGTGTAATGCTGATATTGAAGAAGCAGAAGAGCAGCAGAAAGTTGCTCGAGAAAAACGAGTATTAGAGCAATTTGTCATGGCAGAGATAAACTTACTAGAGAAGTCGCATTTTGCATGGACAGATTTAAGATTGCCAAATAAAACAATGATGGCCGCTGGATTTAATGTTTGGTGTTGCGTGCTAGAATATGAAGGTAAGTGGTTTGCTATAGGTGGAAGGAAGCAAAGTGCTGATATAGAGCTAGAAACTACAATAGTTCATAAAGGTGGTAAGTTACAAGCCTTAGCTGCTGGTGAAGATTTTTTATTGATTAAACTAGTTAGTATATGGAATCCTAAAGGTGGACAAGGTAAAAGCATGCTTGCCATGAATTTAGCAGGTGCTGCTATAGAACTCGGATTAAAACCTCTTGTGATTTGCCAAGACCCACAAGGTACGGCAATGTTGTATTTTAGGTCGGGTAATATTCCATTTAGCGTAATAGATACCATACCTGATAAGCGTCCTGATGCTGATATAGTAATTTTTGATCACCAAGCTAGTGATTGGGATGTCCCTAAAAACAATATTATTGTTATGCCAATGAAACCTGCTCGTGATCAATATGCAACCTATATAGACGCTTATAAAAGAGCAGAAAAACTTAATAAACAAATTATTACTGTTGTTACTGATGGACAGGCTCATAGAGCCAGTGAAAAAGAAACTACTAAATATCTAAAAGAGAAAGGTGCTTTTGTTATTCCTTCTAGTGGAGTGTTTAGCAGAGCATCAAGTGATTACCAAACTATTTTTGATTCCAACATGAATAAGGCTTATAAAGTTAAAGAAAGAAGGATGGAAATTAGCAAAATACTTGCTGCAATTTTAATGTCTAATGAAGAGAAGAAAGAAAATGAATAA

Transcript

rna-Spis24878_mrna

AAACTAGCTCAAAAAGCAGGGGTAAGCCGTGCTACAGCCGAACAATACGATGCTATTCAACGTAAAGGCACTGAAGAGCAAAAAGCCCAAGTTGACGCTGGCGAGTCCAGTATTAAGAAAGTCTACACTCAAATACAGCGAGCCGAACGTTTAAAAAAGAATCAAGCTACAGAATGGCCAGAAGGTAAATACAGAATAATATACGCAGACCCACCTTGGAAGTATGGAGATGAACGTTCTGGTATGGGCGGTGCTGTTGATCAGTATGATCTTATGGAATTGGGAGATATAAAAGCATTGCCAGTTGCGGACTTAGCAGAAGATGATGCAGTATTATTTATGTGGGCTACTGCTCCGTTAATGAGAGAGGCGTGGGAAGTTCTAGATGCTTGGGGCTTTAAATACAAGACTCAATTGATATGGAATAAGGGCAAGGGACCCGTGGAATTAGATAAATTAGCTCAATCAGGTGGTTTTAAAGATGCTGATGATTTAATGGAATATTACCAGCAGGAAACACTAGACATGTGTTTTAGGAATCTACAAGAAGCAGCAGATCGAGATAAGAGCATTGCAGCACTAAAGGAGCATGGAAACACAGTATCAGTTGCGTTTACAGGTGCAGGGAAGACTATTTGCTTATCTGCAGTTATCAAGAAATTGGCTTCAGAGAAGGCTAATCTCAAAACTCTAGTTATAGCCCATAGAGACGAAATCACTTACCAGAACCAAGATAAATTCTTGAAAGTAGCTCCCAATATTAGTACATCATTATTTAATGGTGATACAAAGGACTGGAGCGGTCAAACTGTATTTGGCATGATTCAGTCGTTAAGCAGAGAAAACGCTCTTGAGGAGCTTCCTACTTTCGATTTAGTGGTAATAGACGAAGCTCACCACGTAACTGCTGAAACATACAGGAAGGTTATAGACTGCGTTACTAAAAATAATCCTAATGCTAAAATATTTGGCGTTACTGCTACTCCAATGCGGGGGGATAAGAATAACATTGGCGTAATATTCAGTAATTGTGCAGACCAGATTAGTTTACCAGAACTTATAGGTAGCGGTCATTTAGTACCACCAGTAACCTATCGAATAGATACTGGCGAAACTGGTAAAAAGCTAGAAGCGATTCACTTGCGTAAAGGTTCTGATTACAACGATAAGGAAATAGCAGATATTTTAGATACTGTGCCACTAAATACAAGAGTAGTGGAAGAGTGGAAGGCTAAAGCTGGAAATAGGAAAACAGTAATATTCTGCTCTAACATTGAACATGCTTCCAATGTAACTGACGCTTTTAAACATGCAGGCGTAAAAGCAGAACTAGTAACTAGCTTAATGACTAGTGAGTCAAGGCAGCAAGCCTTACAAGATTTAGAAAGCGGTAAAGTGCAAGTTTTAGTCAATGTAGCTATTCTAACTGAAGGTTGGGACTACCCACCTATCTCATGTGTAGTATTGCTTCGCTGTAGCTCTTACAAGTCTACCATGATACAGATGATAGGCAGGGGTTTGCGTCCTATTGATGCAAGCATTTACCCAAATGATAGCAAAACAGACTGTATCGTATTAGACTTTGGCATATCTACTATCTTGCATGGTAATTTAGAGCAAGAAATTAAGCTAAAAGAAGAATTAGCCAAAGAAAGAGATACTTGCCCAGACTGCAAGAAGAAAATACCTTTAAGTGCTGAAGTTTGTCCGTTGTGTAATGCTGATATTGAAGAAGCAGAAGAGCAGCAGAAAGTTGCTCGAGAAAAACGAGTATTAGAGCAATTTGTCATGGCAGAGATAAACTTACTAGAGAAGTCGCATTTTGCATGGACAGATTTAAGATTGCCAAATAAAACAATGATGGCCGCTGGATTTAATGTTTGGTGTTGCGTGCTAGAATATGAAGGTAAGTGGTTTGCTATAGGTGGAAGGAAGCAAAGTGCTGATATAGAGCTAGAAACTACAATAGTTCATAAAGGTGGTAAGTTACAAGCCTTAGCTGCTGGTGAAGATTTTTTATTGATTAAACTAGTTAGTATATGGAATCCTAAAGGTGGACAAGGTAAAAGCATGCTTGCCATGAATTTAGCAGGTGCTGCTATAGAACTCGGATTAAAACCTCTTGTGATTTGCCAAGACCCACAAGGTACGGCAATGTTGTATTTTAGGTCGGGTAATATTCCATTTAGCGTAATAGATACCATACCTGATAAGCGTCCTGATGCTGATATAGTAATTTTTGATCACCAAGCTAGTGATTGGGATGTCCCTAAAAACAATATTATTGTTATGCCAATGAAACCTGCTCGTGATCAATATGCAACCTATATAGACGCTTATAAAAGAGCAGAAAaacttaataaacaaattattacTGTTGTTACTGATGGACAGGCTCATAGAGCCAGTGAAAAAGAAACTACTAAATATCTAAAAGAGAAAGGTGCTTTTGTTATTCCTTCTAGTGGAGTGTTTAGCAGAGCATCAAGTGATtaccaaactatttttgattCCAACATGAATAAGGCTtataaagttaaagaaagaagGATGGAAATTAGCAAAATACTTGCTGCAATTTTAATGTCTaatgaagagaagaaagaaaatgaataa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF05063 all species →	MT-A70	MT-A70	Family	Interproscan
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050742 all species →	Family	Helicase and Restriction-Modification Enzyme	Interproscan
IPR007757 all species →	Family	MT-A70-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR002052 all species →	Conserved_site	DNA methylase, N-6 adenine-specific, conserved site	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47396 all species →	TYPE I RESTRICTION ENZYME ECOKI R PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0032259 all species →	Biological Process	methylation	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX11404.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.