Gene detail

Detailed information of PFX11489.1 in Stylophora pistillata

Genomic Location: Spis.scaffold2398:5597...8097
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

htrA

ATGATGATCAATCGAAATAAATGGCTTCAAGTTTTAAGTTTGGGACTGATTCTATTTTTTGGGGCTGGAGATGTTAAAGCGCACGATAAAGGGTTTGCAGATGTTGTCGCCCCCTTATTACCAGGTGTTGTAAACATTTCCATAACACGCGAAGTAAAAGCGCCGAAGGGGCCTGCAATTCCCCCAGGATCTCCCTTTGAAGACCTTTTTAGACAATTCTTTGAAGGACAAGGCGGTATGATGGGAGGCCGTGCTCGAACAGTGAAATCTCTTGGATCAGGATTTGTCGTTGATCCTTCTGGGTACATTGTTACTAACAACCACGTGGTTGCAGACGCACAAGAAGTTCTTGTAACATTTCAACCGACAGGTGATGATGAAGAAACAGAATTAAAAGCAAAAATAATTGGGCGTGACCCAAGAACAGACTTAGCGCTCTTAAAAGTTGAGTCAAAAAAACCCTTAACAGCATTAAAATGGGGAGACTCCACACAAACGCGGGTTGGAGATTGGGTGATTGCCATTGGAAACCCGTTTGGTTTAGGTAGTACGGTAACGTCTGGAATTATTTCTAATATTGGCCGTGATGTCACAATGGGACCTGCGCAGTATATTGAAGGCTTTTTACAAATTGATGCCCCTGTAAACCAAGGAAACTCTGGTGGCCCTGCAATTAACGCACGTGGTGAAGTTATTGGCGTTATTAATGCCATTGCCACCACAACGGGCGGTAATATTGGTATTGGATTTGCAATCCCTTCAGAAGTTGCGAAAACAACAATTGAGCAATTAAAAAAATTTGGACGCACACGCCGAGGCCGTTTAGGCGTTGGTGTTCTTCCTGTTGATAAAGAAAAAGCAAAGTACTATGGCTTGATCAGGCCATATGGTGCAGAAGTTAACGAAGTCAATGAAGGAGGACCTGCAGATAAAGGTGGCATTAAAGAAGGAGATATTATCCTTGAATTTAATGGCCAAAAGATCAAATCATCCCGTCATCTCCCCCGTGTTGTCGGAGAAACACCGATTGGCCGCAAGGTTCCCGTTGTTGTTTGGAGAGACAAAAAGCGTACCACACTTTCTGTACAGGTCGGTGATTATGAAGAAGCTGAAAAAGTTGCTTCTGGAAGTGACCTAGATGAAGCAGATGAGGCAGATGAGGATGGAGGCGATGTCATTAAAGAACTGGGCATTACTCTACATCCACTTAACCTCTCAGCGAGAGAACGCTATCGTATTGCTGATGATGTGCAAGGTGTTGTCATTATCGGTATGGACATGGAAGGCGTTGCTGCGTCTAAAGGGCTCCGCCGTGGTGATGTTGTGATCTCTGTTGATGGGGGTAATATTGCTTCAATCAAAGATTTACGCAGCGCCATTGATCAATCTAAAAAGGAGGGACGCGAGTTTATGCGTTGGCGTATTAGTCGCCAAGGGCGGAATTTATTTGTTGTGCTTCCCACAGATCCTGATGAAAATCAAAGTGCTTCTTTACGCTTGGATTCTTATTTAACTAAGATTTGTGAAGATTTATCAAGATCTCGCCTAAAACGCCTGATTGAACAAGGACATGTCAGCGTTCAGGGACAAGTTATTCTTTCTCCAAAACATCGATTAAAGCCTGGAGATTCTATCCATTTAAATCTTCCTTCTGTTAAACCAACGCATCTTTCTGCGCAGCCTTTAGATCTAGATATTATCTTCGAAGATGACGACATTATTGTCATTAACAAACCAGCAGGATTGGTCGTTCATCCTGGAGCTGGTAACCCAGATCATACACTTGTCAATGCGCTCTTAGCTCATTGTGGCGATAGCTTTTTGAATATAGGAGGACAAGAACGTCCTGGCCTTGTCCATCGCTTAGATAAAGATACAAGCGGTTTAATGGTTGCTGCAAAAACAGAGCAAGCTTACCAAGGCCTTACAAAACAATTTTCTGATCGTACCATTAAACGCATTTATCAAGCTCTTGTTTGGGGAATCGTTAGCCCTTTTCAAGGAAAGATCGACCAACCAATTGCGCGCCACCCCCGGCAACGTCAAAAAATGGCTGTTTTACGCAATGGCCGCCCAGCAGTGACGCATTATCAGGTATTAGAATCTTTTCCTCCTTATTTAACACTGGTTGAATGTCAATTAGAAACAGGACGTACCCATCAAATTCGTGTCCACATGACCTCTATTCAGCACCCTCTTTTCGCAGACTCGGCCTATGGGCGCCCTCCAAAGGGCTTATTTATAGATGACCTGAAAGAGGCTTCTCAAAAATTAAGACGGCAAGCATTACATGCAAAGTCCCTAAGTTTTCTTCATCCAATCTCTGGAGAAAACATTGATTTGACTCTAATTTGCCGGAAGACCTTATGA

Transcript

rna-Spis24759_mrna

ATGATGATCAATCGAAATAAATGGCTTCAAGTTTTAAGTTTGGGACTGATTCTATTTTTTGGGGCTGGAGATGTTAAAGCGCACGATAAAGGGTTTGCAGATGTTGTCGCCCCCTTATTACCAGGTGTTGTAAACATTTCCATAACACGCGAAGTAAAAGCGCCGAAGGGGCCTGCAATTCCCCCAGGATCTCCCTTTGAAGACCTTTTTAGACAATTCTTTGAAGGACAAGGCGGTATGATGGGAGGCCGTGCTCGAACAGTGAAATCTCTTGGATCAGGATTTGTCGTTGATCCTTCTGGGTACATTGTTACTAACAACCACGTGGTTGCAGACGCACAAGAAGTTCTTGTAACATTTCAACCGACAGGTGATGATGAAGAAACagaattaaaagcaaaaataattggGCGTGACCCAAGAACAGACTTAGCGCTCTTAAAAGTTGAGTCAAAAAAACCCTTAACAGCATTAAAATGGGGAGACTCCACACAAACGCGGGTTGGAGATTGGGTGATTGCCATTGGAAACCCGTTTGGTTTAGGTAGTACGGTAACGTCTGGAATTATTTCTAATATTGGCCGTGATGTCACAATGGGACCTGCGCAGTATATTGAAGGCTTTTTACAAATTGATGCCCCTGTAAACCAAGGAAACTCTGGTGGCCCTGCAATTAACGCACGTGGTGAAGTTATTGGCGTTATTAATGCCATTGCCACCACAACGGGCGGTAATATTGGTATTGGATTTGCAATCCCTTCAGAAGTTGCGAAAACAACAATtgagcaattaaaaaaatttggacgCACACGCCGAGGCCGTTTAGGCGTTGGTGTTCTTCctgttgataaagaaaaagcaaagtaCTATGGCTTGATCAGGCCATATGGTGCAGAAGTTAACGAAGTCAATGAAGGAGGACCTGCAGATAAAGGTGGCATTAAAGAAGGAGATATTATCCTTGAATTTAATGGCCAAAAGATCAAATCATCCCGTCATCTCCCCCGTGTTGTCGGAGAAACACCGATTGGCCGCAAGGTTCCCGTTGTTGTTTGGAGAGACAAAAAGCGTACCACACTTTCTGTACAGGTCGGTGATTATGAAGAAGCTGAAAAAGTTGCTTCTGGAAGTGACCTAGATGAAGCAGATGAGGCAGATGAGGATGGAGGCGATGTCATTAAAGAACTGGGCATTACTCTACATCCACTTAACCTCTCAGCGAGAGAACGCTATCGTATTGCTGATGATGTGCAAGGTGTTGTCATTATCGGTATGGACATGGAAGGCGTTGCTGCGTCTAAAGGGCTCCGCCGTGGTGATGTTGTGATCTCTGTTGATGGgggtaatattgcttcaatcaaAGATTTACGCAGCGCCATTGATCAATCTAAAAAGGAGGGACGCGAGTTTATGCGTTGGCGTATTAGTCGCCAAGGGCGGAATTTATTTGTTGTGCTTCCCACAGATCCTGATGAAAATCAAAGTGCTTCTTTACGCTTGGATTCTTATTTAACTAAGATTTGTGAAGATTTATCAAGATCTCGCCTAAAACGCCTGATTGAACAAGGACATGTCAGCGTTCAGGGACAAGTTATTCTTTCTCCAAAACATCGATTAAAGCCTGGAGATTCTATCCATTTAAATCTTCCTTCTGTTAAACCAACGCATCTTTCTGCGCAGCCTTTAGATCTAGATATTATCTTCGAAGATGACGACATTATTGTCATTAACAAACCAGCAGGATTGGTCGTTCATCCTGGAGCTGGTAACCCAGATCATACACTTGTCAATGCGCTCTTAGCTCATTGTGGCGATAGCTTTTTGAATATAGGAGGACAAGAACGTCCTGGCCTTGTCCATCGCTTAGATAAAGATACAAGCGGTTTAATGGTTGCTGCAAAAACAGAGCAAGCTTACCAAGGCcttacaaaacaattttctgaTCGTACCATTAAACGCATTTATCAAGCTCTTGTTTGGGGAATCGTTAGCCCTTTTCAAGGAAAGATCGACCAACCAATTGCGCGCCACCCCCGGCAACGTCAAAAAATGGCTGTTTTACGCAATGGCCGCCCAGCAGTGACGCATTATCAGGTATTAGAATCTTTTCCTCCTTATTTAACActggttgaatgtcaattagaaACAGGACGTACCCATCAAATTCGTGTCCACATGACCTCTATTCAGCACCCTCTTTTCGCAGACTCGGCCTATGGGCGCCCTCCAAAGGGCTTATTTATAGATGACCTGAAAGAGGCTTCTCAAAAATTAAGACGGCAAGCATTACATGCAAAGTCCCTAAGTTTTCTTCATCCAATCTCTGGAGAAAACATTGATTTGACTCTAATTTGCCGGAAGACCTTATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01479 all species →	S4	S4 domain	Domain	Interproscan
PF00849 all species →	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan
PF13180 all species →	PDZ_2	PDZ domain	Domain	Interproscan
PF13365 all species →	Trypsin_2	Trypsin-like peptidase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006225 all species →	Family	Pseudouridine synthase, RluC/RluD	Interproscan
IPR006145 all species →	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR011782 all species →	Family	Peptidase S1C, Do	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR002942 all species →	Domain	RNA-binding S4 domain	Interproscan
IPR006224 all species →	Conserved_site	Pseudouridine synthase, RluA-like, conserved site	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR036986 all species →	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR020103 all species →	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR001940 all species →	Family	Peptidase S1C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22939 all species →	SERINE PROTEASE FAMILY S1C HTRA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0009451 all species →	Biological Process	RNA modification	Interproscan
GO:0009982 all species →	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0042597 all species →	Cellular Component	periplasmic space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04771	degP, htrA; serine protease Do	EC:3.4.21.107	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.