Gene detail

Detailed information of PFX11573.1 in Stylophora pistillata

Genomic Location: Spis.scaffold2215:2083...10061
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

slt-1

ATGATAATGGTTGCTCAGCGTCTGAAGAGACAATTTGTTGCACTTGTTGCATGCATTCTGATTGGTATACCGGATGGCCTTGCAAATACAACAATGTCATCTTCATCTGCAAGTGACATGACATCAATGGTGCATATGACGCCATCCCCATCTACAAGTAACATGACATCAATGATGAATATGACATCATCTGCATCTGCAAGCAACATGACATCAAGGATGAATATGACGTCATCCGCATCTTCAAGTGACATGAAATCAATGGTGCAGATGATGTCATCCCCATCTACAAGTAACATGTCACCAACGGAGCATGCGACGTCATCCCCATCGGCAAGTGACACGACATCAATGACGAATGTGGTGCCATCCGCATCTCCAAGTAACATGACATCAACAGTGCATATGACGCCATCCCCATCTGCAAGTGACATGTCATCAACGGAGCATGCGATGTCATCCCCATCTGCAAGCAACACGACATCAATGATGAATGTGATGCTATCCACATCTGCAAGTAACATGACATCAGTAGTGCATATGACGCCATCCCCATCTGCAAGTGACATGTCATCAACGGTGCAGATGATGTCATCCCCATCTACAAGTAACATGTCATCAATGGACACGACATCAATGACGAATGTGGTGCCATCCGCATCTCCAAGTAACATGACATCAACAGTGTATATGACGCCATCCCCATCTGCAAGTGACAAGTCATCAATGATGCAAATGATGTCATCCCCGTCTGCTACTGATACAACGACAAAGATGGCTGTTATGCCATCACCATCTGTTAGTGAAATGGTTCTGACGGCAACGCCAAAGCCTACGTGTTCTCCAGGATTTACTGGCGGGAATTGCTCTTTAAATATTAATGACTGTCTACACGAAAACTGTTCAGGAAATGGTCGTTGTACTGACAAAGTAAATGGCTTTGTATGTGTTTGTGACGATGGTTACTTTGGAGAAAACTGTGAGAAAAGCTTTGCAAATACAACAATGTCATCTCCATCTGCAAGTAACATGTCATCAAAGGAGCATGCGACGGCATCTCCATCTGCACGTGACATGACATCAATGGTGCATATGACGCCATCCCCATCTGCAAGTAGCATGACATCAATGGTGCATGCGCTGTCATCCCCATCTGCAAGCAACATGTCATCAATGATGAATATAAAGTCATCCGCATCTGCAAGTGACATGACATCAATGGTGCAGATGATGTCATCCCCATCTACAAGTAACATGTCATCAACGGAGCATGCGACGTCATCCCCATCTGCAAGTGACACGACATCAATGATGAATGTGATGCCATCCACATCTGCAAGTAACATGACATCAACAGTGCATATGACGCCATCCCCATCTGCAAGTGATATGTCATCAATGATGCAAATGGTGTCATCCCCGTCTGCTATTGATACGACGACAAAAATGGCTGTTATGCCATCACCATCTGCTAGTGAAATGGTTCTTACGGCAACGCCAAAGCCTACGTGTTCTCCAGGATTTACTGGAGGGAACTGCTCTATAAATATTGATGACTGTACACACGATAGCTGTTCCGGAAATGGTCTTTGTACTGACAAAGTAAATGACTTTGTATGTGTTTGTAACGATAGTTACTTTGGAAAAAACTGTGAGGAAAAGAAGCCTACTCAGACACTTTCCGCTACAATGAAATTGGATCAAGAGTATGACAATGCCTATAGTGACATCAACTCAGCAAAATCTCGTGCCCTCAAGACTGATTTAAACCTTGTATTGATACCTTTTTTCCAAGCGAAATTTCCAGATTTCATAGGTATCAAATACAAGCGTTTTTTCAATGGAAGTGTTGGGGTTGAATATGAACTGATATTTCCAACAACTTCAAATGTAACCGCTAACAACATCGTTCAGGCTCTTAAGGATGCTAATGGAAAAAAAGAACTGGGATTCTTGAGTCTGACGGGAGATATAACCGTAACGAAGCAGATTAAATACAGAAACGCTGTTCGGGATGAAAAGAGAGAACTCTATGCTCTTGATGGAAACTGGGAATTAATGGAGAACGGATCTAACGGCTTGAGGGCTCATCCTGATTTCAAGAGTCGTAACGCACCACAGAGCTATGTGTCTCCAATGTATGAGAGAGTATCTGGATCGGATAACAAAGCATATCACGAAGACAGTGCATTGTAG

Transcript

rna-Spis24641_mrna

ATGATAATGGTTGCTCAGCGTCTGAAGAGACAATTTGTTGCACTTGTTGCATGCATTCTGATTGGTATACCGGATGGCCTTGCAAATACAACAATGTCATCTTCATCTGCAAGTGACATGACATCAATGGTGCATATGACGCCATCCCCATCTACAAGTAACATGACATCAATGATGAATATGACATCATCTGCATCTGCAAGCAACATGACATCAAGGATGAATATGACGTCATCCGCATCTTCAAGTGACATGAAATCAATGGTGCAGATGATGTCATCCCCATCTACAAGTAACATGTCACCAACGGAGCATGCGACGTCATCCCCATCGGCAAGTGACACGACATCAATGACGAATGTGGTGCCATCCGCATCTCCAAGTAACATGACATCAACAGTGCATATGACGCCATCCCCATCTGCAAGTGACATGTCATCAACGGAGCATGCGATGTCATCCCCATCTGCAAGCAACACGACATCAATGATGAATGTGATGCTATCCACATCTGCAAGTAACATGACATCAGTAGTGCATATGACGCCATCCCCATCTGCAAGTGACATGTCATCAACGGTGCAGATGATGTCATCCCCATCTACAAGTAACATGTCATCAATGGACACGACATCAATGACGAATGTGGTGCCATCCGCATCTCCAAGTAACATGACATCAACAGTGTATATGACGCCATCCCCATCTGCAAGTGACAAGTCATCAATGATGCAAATGATGTCATCCCCGTCTGCTACTGATACAACGACAAAGATGGCTGTTATGCCATCACCATCTGTTAGTGAAATGGTTCTGACGGCAACGCCAAAGCCTACGTGTTCTCCAGGATTTACTGGCGGGAATTGCTCTTTAAATATTAATGACTGTCTACACGAAAACTGTTCAGGAAATGGTCGTTGTACTGACAAAGTAAATGGCTTTGTATGTGTTTGTGACGATGGTTACTTTGGAGAAAACTGTGAGAAAAGCTTTGCAAATACAACAATGTCATCTCCATCTGCAAGTAACATGTCATCAAAGGAGCATGCGACGGCATCTCCATCTGCACGTGACATGACATCAATGGTGCATATGACGCCATCCCCATCTGCAAGTAGCATGACATCAATGGTGCATGCGCTGTCATCCCCATCTGCAAGCAACATGTCATCAATGATGAATATAAAGTCATCCGCATCTGCAAGTGACATGACATCAATGGTGCAGATGATGTCATCCCCATCTACAAGTAACATGTCATCAACGGAGCATGCGACGTCATCCCCATCTGCAAGTGACACGACATCAATGATGAATGTGATGCCATCCACATCTGCAAGTAACATGACATCAACAGTGCATATGACGCCATCCCCATCTGCAAGTGATATGTCATCAATGATGCAAATGGTGTCATCCCCGTCTGCTATTGATACGACGACAAAAATGGCTGTTATGCCATCACCATCTGCTAGTGAAATGGTTCTTACGGCAACGCCAAAGCCTACGTGTTCTCCAGGATTTACTGGAGGGAACTGCTCTATAAATATTGATGACTGTACACACGATAGCTGTTCCGGAAATGGTCTTTGTACTGACAAAGTAAATGACTTTGTATGTGTTTGTAACGATAGTTACTTTGGAAAAAACTGTGAGGAAAAGAAGCCTACTCAGACACTTTCCGCTACAATGAAATTGGATCAAGAGTATGACAATGCCTATAGTGACATCAACTCAGCAAAATCTCGTGCCCTCAAGACTGATTTAAACCTTGTATTGATACCTTTTTTCCAAGCGAAATTTCCAGATTTCATAGGTATCAAATACAAGCGTTTTTTCAATGGAAGTGTTGGGGTTGAATATGAACTGATATTTCCAACAACTTCAAATGTAACCGCTAACAACATCGTTCAGGCTCTTAAGGATGctaatggaaaaaaagaactggGATTCTTGAGTCTGACGGGAGATATAACCGTAACGAAGCAGATTAAATACAGAAACGCTGTTCGGGATGAAAAGAGAGAACTCTATGCTCTTGATGGAAACTGGGAATTAATGGAGAACGGATCTAACGGCTTGAGGGCTCATCCTGATTTCAAGAGTCGTAACGCACCACAGAGCTATGTGTCTCCAATGTATGAGAGAGTATCTGGATCGGATAACAAAGCATATCACGAAGACAGTGCATTGTAG

Protein

Pfam domain

No Pfam domain signature was detected for PFX11573.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR051355 all species →	Family	Notch and Slit guidance protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45836 all species →	SLIT HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0008201 all species →	Molecular Function	heparin binding	Interproscan
GO:0048495 all species →	Molecular Function	Roundabout binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX11573.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.