Gene detail

Detailed information of PFX12132.1 in Stylophora pistillata

Genomic Location: Spis.scaffold1566:948...5333
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

STOML2

ATGAATCACCAACAGTTTTATCAATGCATATTCTGGCTCTACTATGCAAGAGGCTTATTACAATCTAAGCTTAAGCACCATAGTGATGCTATTAGTTCATTTGCAGCTAGTCTTGATGCCAAGAGTTATTCTAAAATTCTTATAGGTAATGTAGAACTTGCCAAAGAAGAACTAACTAACAATAGACAAATACTAAAAACTGCTGAAAGAAATATTGCTGGTAAGTTCAATTCTAGTGTTGACCTTGCAATAAAAGCTAATTCTGTAAAACTAGCTGAAAAGTACCAACAGGTAATAAACTACTTTGAGGGACTATTACAAAATAATCAGAATACAACTGAATTAGACTTTACTTCAATGTTTGATGTTCCTGTAAGTGAATATGATAACCAAAATCCTAAAATACAGTATGGTTATGCACATTATCATAAGGGATTAAGCCAGATAGCTATTGATAAGAAAAAAGACGCTGTAGAGTCGTTTAACGCCACTAATAAGTTGTTACCTTATTTTGCAGAAGCCTATATCCAGAAAGCTTATATATTCAAAGAACAAAAGCAATTCAAAAAAGCTCTGGTACAATATGATGCAGCTATCAGTAAACTCTATCCAAATTGTTTTTCTAAAACACCTAAACCACTTGCAATTGGTATCAACAAAGTAATGCTTGAAGAAGAAAGTAAAAAACCAGAAGAAGAGCAGGTAAGTAAAACAGCTATAATACCACAACAAGAAGCATGGGTAATGGAGAAGCTGGGTAAGTTTGATAGGGTTATGGAACCCGGATTAAATATTATTATTCCAATAATACAAAGGATTGCCTACAAACATACCTTAAAAGAGCAGGCAATAGATGTGCATGAGCAAACAGCAATTTCTAATGACAACGTAACTTTAACTATTGATGGTGTATTATACGTAAAAGTTATAGACCCTAAGGTTGCATCATATGGAGTTAGTGACCCTTATTATGCAGTAGCTCAACTTGCACAAACAACAATGCGTTCTGAAATAGGTAAACTCAAACTAGATAAGACCTTTGAGGAAAGAGAGATATTAAACCATGCAATTGTTACTACAATAAATGAGGCTGCAGTTAATTGGGGTATTCAATGTATGCGCTACGAAATAAAAGACATACAACCACCAAGAACAATACTTAAGGCCATGGAAATGGAAGTTGCAGCAGAAAGGCAAAAAAGAGCCGAGATATTAGAATCTGAAGGGAAGCGTCAGTCTCTTATCAATAAAGCTGAAGGAGAGAAGGCGCAGGTAGTATTAAATTCAGAAGCCTCACTTACTGATCAGGTAAACAGAGCTAAGGGTGAAGCTGAAGCTATAATATGTGTAGCAGATGCTACTGCAAAAGGTATTGATATATTAGCTAAATCCATTAATAAAGCAGGTGGAACTGAGGCGGTTTCATTAAAAGTAGCAGAGCAATATGTAGAAGCATTTAGCAAACTTGCTAAAGAAAGTAATACTATTTTACTGCCAGCTAATATAGACAACCCAAGTGGGATTATTGCACAAGCAATGACTATATATGATAATCTAGGTGAAGGAAAGGAGGTATCACTTGTTGGCTTTGGTAACTTTTCAGTTGCTGACGTTCCAGCACGTGCAGGGAGAAATCCAAGAACAGGTGAAGCTTTAGAAATTAAAGCATATAAGCAACCTAGATTTAAGGTTGGACAGAAGCTAAAGGATGCAGTGAATAAGATAAGCGCAGAAAATGCACAAATACTCTTCTGGGTATATGCTGTACTTATTGGAATGTCTCTAGCAGCACTGGGGCTAATATATACAGGAGTGTCAATAGCAAGAACATTCTTTGTCTGCTCTGCTATGTTTGGTGGACTAATTGCTTATGATACGCAGAAGCTAAAGCATATTTATTACAGTGGGCATGATGCTAATGAAACACAAAGGCTGAAGCAAGTAGTAAGCAAAATTGAAGCTATTGAGCAGGAACGTTTGGATAATGCAGAATTATTGAAAGATGCTTACAATGAGGCTAAAGCACTTGGATTTGACGTAAAAATTATCAAGTATGTTCTTAAACTCAAAAAGAAAGATAAGGATGCTCTTGCTGAAGAAATTAATATATTCTATTATTTAGATTCAACTTTAAGTAGAGATTATGAAGGTTAA

Transcript

rna-Spis23956_mrna

ATGAATCACCAACAGTTTTATCAATGCATATTCTGGCTCTACTATGCAAGAGGCTTATTACAATCTAAGCTTAAGCACCATAGTGATGCTATTAGTTCATTTGCAGCTAGTCTTGATGCCAAGAGTTATTCTAAAATTCTTATAGGTAATGTAGAACTTGCCAAAGAAGAACTAACTAACAATAGACAAATACTAAAAACTGctgaaagaaatattgctgGTAAGTTCAATTCTAGTGTTGACCTTGCAATAAAAGCTAATTCTGTAAAACTAGCTGAAAAGTACCAACAGGTAATAAACTACTTTGAGGGACTATTACAAAATAATCAGAATACAACTGAATTAGACTTTACTTCAATGTTTGATGTTCCTGTAAGTGAATATGATAaccaaaatcctaaaatacagTATGGTTATGCACATTATCATAAGGGATTAAGCCAGATAGCTATTGATAAGAAAAAAGACGCTGTAGAGTCGTTTAACGCCACTAATAAGTTGTTACCTTATTTTGCAGAAGCCTATATCCAGAAAGCTTATATATTCAAAgaacaaaagcaattcaaaaaaGCTCTGGTACAATATGATGCAGCTATCAGtaAACTCTATCcaaattgtttttctaaaaCACCTAAACCACTTGCAATTGGTATCAACAAAGTAATGCTtgaagaagaaagtaaaaaaccaGAAGAAGAGCAGGTAAGTAAAACAGCTATAATACCACAACAAGAAGCATGGGTAATGGAGAAGCTGGGTAAGTTTGATAGGGTTATGGAACCCggattaaatattattattccAATAATACAAAGGATTGCCTACAAACATACCTTAAAAGAGCAGGCAATAGATGTGCATGAGCAAACAGCAATTTCTAATGACAACGTAACTTTAACTATTGATGGTGTATTATACGTAAAAGTTATAGACCCTAAGGTTGCATCATATGGAGTTAGTGACCCTTATTATGCAGTAGCTCAACTTGCACAAACAACAATGCGTTCTGAAATAGGTAAACTCAAACTAGATAAGACCTTTGAGGAAAGAGAGATATTAAACCATGCAATTGTTACTACAATAAATGAGGCTGCAGTTAATTGGGGTATTCAATGTATGCGCTACGAAATAAAAGACATACAACCACCAAGAACAATACTTAAGGCCATGGAAATGGAAGTTGCAGCAGAAAGGCAAAAAAGAGCCGAGATATTAGAATCTGAAGGGAAGCGTCAGTCTCTTATCAATAAAGCTGAAGGAGAGAAGGCGCAGGTAGTATTAAATTCAGAAGCCTCACTTACTGATCAGGTAAACAGAGCTAAGGGTGAAGCTGAAGCTATAATATGTGTAGCAGATGCTACTGCAAAAGGTATTGATATATTAGCTAAATCCATTAATAAAGCAGGTGGAACTGAGGCGGTTTCATTAAAAGTAGCAGAGCAATATGTAGAAGCATTTAGCAAACTTGCTAAAGAAAGTAATACTATTTTACTGCCAGCTAATATAGACAACCCAAGTGGGATTATTGCACAAGCAATGACTATATATGATAATCTAGGTGAAGGAAAGGAGGTATCACTTGTTGGCTTTGGTAACTTTTCAGTTGCTGACGTTCCAGCACGTGCAGGGAGAAATCCAAGAACAGGTGAAGCTTTAGAAATTAAAGCATATAAGCAACCTAGATTTAAGGTTGGACAGAAGCTAAAGGATGCAGTGAATAAGATAAGCGCAGAAAATGCACAAATACTCTTCTGGGTATATGCTGTACTTATTGGAATGTCTCTAGCAGCACTGGGGCTAATATATACAGGAGTGTCAATAGCAAGAACATTCTTTGTCTGCTCTGCTATGTTTGGTGGACTAATTGCTTATGATACGCAGAAGCTAAAGCATATTTATTACAGTGGGCATGATGCTAATGAAACACAAAGGCTGAAGCAAGTAGTAAGCAAAATTGAAGCTATTGAGCAGGAACGTTTGGATAATGCAGAATTATTGAAAGATGCTTACAATGAGGCTAAAGCACTTGGATTTGACGTAAAAATTATCAAGTATGTTCTTAAACTCAAAAAGAAAGATAAGGATGCTCTTGCTGAAGAAATTAATATATTCTATTATTTAGATTCAACTTTAAGTAGAGATTATGAAGGTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10073 all species →	GapR_DNA-bd	GapR-like, DNA-binding domain	Domain	Interproscan
PF01145 all species →	Band_7	SPFH domain / Band 7 family	Family	Interproscan
PF00216 all species →	Bac_DNA_binding	Bacterial DNA-binding protein	Domain	Interproscan
PF16200 all species →	Band_7_C	C-terminal region of band_7	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR010992 all species →	Homologous_superfamily	Integration host factor (IHF)-like DNA-binding domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR046367 all species →	Domain	GapR-like, DNA-binding domain	Interproscan
IPR001107 all species →	Domain	Band 7 domain	Interproscan
IPR000119 all species →	Family	Histone-like DNA-binding protein	Interproscan
IPR050710 all species →	Family	Band 7/mec-2 domain-containing protein	Interproscan
IPR036013 all species →	Homologous_superfamily	Band 7/SPFH domain superfamily	Interproscan
IPR001972 all species →	Family	Stomatin/HflK family	Interproscan
IPR032435 all species →	Domain	STML2-like, C-terminal extension	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43327 all species →	STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0030527 all species →	Molecular Function	structural constituent of chromatin	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0007005 all species →	Biological Process	mitochondrion organization	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX12132.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.