Gene detail

Detailed information of PFX12263.1 in Stylophora pistillata

Genomic Location: Spis.scaffold1477:20133...25571
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

MTPAP

ATGATAGCGTCTGTGTTAGATCAAGTCTTCTCTCTGCTCGTCAGCTGTGGAGCTTTTATCTTGGAAGTGAAACTCATGAAATTCGAGTCGCTCATCTCACAAACCCTTAACACCACTTCGCTTCTCCCAACCCACAACAATGGCAAAAAACATCAAAGGATGCTGAAGTTAAAAGAAGGGAGAGAACGTTCTTGTAGAAATAGCATTTATGTGCGAGGTTTTCAAAACTCAGGATCCATAGAAGAAGATTTAGCAAAATACCTCAGTGCATATGGAAAAGTCTCAAACATATTCTTGGATAAAGATAAGGGTGTTTTTGCAATAGTGGAGTTTTCTAGTGAAGAAAGTGTTGCAAAAATGCTGAGTCAACTGGAGTCATTACCACCTCTGCATAAAAAACACCTTACAGTGAAAGAAAGGACTTTAACGAAAACTGGCTTTCAATTTAAAATGCAAAAACCTATAAAGCGTGGTCATGATGACTCTGAGCAATACCACTGTGGGCATTTGGGAAGCAAAGAGATGGCAAAATTTTTGTCAAAGGATCTCATTGTCAAACTGAATTCGTTGATGAAGGTGGATGAACAAGTGAACATTTTGATGCAGCAATTGTGTCTCAGTGATGAAGACATCAAATTAAGAAGACTGGTTTTAGTTGATGCCCTGCGTAGTTTTGCTCCCGGTTGCACAAACATCATACCAGTCTTGACTGCTAAATGCCCTCACATTAAATTCACACATCTGCCCTCTGGATTGTCGTGTGACCTATCAGTAAACAACAGGCTCGGTGTAAGAAACTCAGAGCTCCTTCACTGCTATATGTGCCTTGATCCCAGGATTACTCAGCTGGTCTTTGTTGTGAGAGCCTGGGCTAAAGCCAAAGCCCTAACCGCTAGCAGGCAGCTGTCAAACTATGCATTGACTCTGATGGTGCTATACTTCCTGCAAATGCAACATCCACCAGTCATTCCTTCATTACAATGTAGATTTGATACCTGGATCAGAGAGGGACCACATTTGTGTGCCATGAAAGAGCCTAATTCAGAGATTATTGACAACTGGAACTGTTCATTTTTCACAGATGTTACTAAACTTTCTCCCTCACAGAATACCAAAAGTCTGATTCAGTTATTGGAAGAGTTCTTTTGCTTCTTTTCAACTGAATTTGACTTTGCTAATTGTGTGAACATTACCATGGCAACACTGAGAAACATCATTGAATTGATGAAGATTGCTCACAAGATTTGCCAGGATCTGAATAGCAGTGTTGACAATCCAAATCCCACTGGAAATAATCTCTTAAGCCTTTTTACAGTTTGTAAATCTTCTAAAAAGAAGAAACATTCTCAGCGCCATGATTTCTTCGTTAAGTATCAAAACAAAAGTTCTCAAGCACTGGACACAGGTTGTGTTGACAACCTGAGTAAACCCCACGCAGTTTTTGTGTCTGTTCTAGAGACATTAGAAAGGGAGTATGGATTTCAGTTTAAAGTTAAAAGTTCTGCTAAGATGCCCTGCTCTATTGTGGAAGAATCTGGTGTGCTTAGCAAAATTCAGGGTGTCAAAACATCACTGGTGCCCCAGCTTTCTGGCCACATCTCTGCTGCAGATTGCAGCAACACCAAAAATGAAGCAAGGATATCAGAGAAAGTAAACAAATTTAACAATGAGTTTTCAGCGATTTGCAAAGCCTTTGAAAATACGTGGACCCATTGTCGAAGAGAACAGCGCAGGTCCCTTCAGCCTCAGAAACACGGTAATGGGAACAACGATAATCCAAGCAAAGATAAATTATATGATACAAGATCAGGTCAATTGTTAGAAGGATGTAACAATCAGGTTGAGGAGTTTGCAAATGCTCCTGCCACTGCCCATCCACTTCTCAGTTTCGAATTGAATGTAAGAAGTTTCCCTCAAAAGGAGGTCAAAAATGGTTGTACTGTCCTCATGGAACATGTTGAAAGTAAAGAATCTCAGCTATTTGGAAACTTCTTTTCTGCTTTCAAGAAGTATTTCTTGAGTTTAGTAACAAAGTAA

Transcript

rna-Spis23809_mrna

ATGATAGCGTCTGTGTTAGATCAAGTCTTCTCTCTGCTCGTCAGCTGTGGAGCTTTTATCTTGGAAGTGAAACTCATGAAATTCGAGTCGCTCATCTCACAAACCCTTaacaccaCTTCGCTTCTCCCAACCCACAACAATGGCAAAAAACATCAAAGGATGctgaagttaaaagaagggagAGAACGTTCTTGTAGAAATAGCATTTATGTGCGAGGTTTTCAAAACTCAGGATCCATAGAAGAAGATTTAGCAAAATACCTCAGTGCATATGGAAAAGTCTCAAACATATTCTTGGATAAAGATAAGGGTGTTTTTGCAATAGTGGAGTTTTCTAGTGAAGAAAGTGTTGCAAAAATGCTGAGTCAACTGGAGTCATTACCACCTCTGCATAAAAAACACCTTACAGTGAAAGAAAGGACTTTAACGAAAACTGGCTTTcaatttaaaatgcaaaaacctATAAAGCGTGGTCATGATGACTCTGAGCAATACCACTGTGGGCATTTGGGAAGCAAAGAGATGgcaaaatttttgtcaaaggaTCTCATTGTCAAACTGAATTCGTTGATGAAGGTGGATGAACAAGTGAACATTTTGATGCAGCAATTGTGTCTCAGTGATGAAGACATCAAATTAAGAAGACTGGTTTTAGTTGATGCCCTGCGTAGTTTTGCTCCCGGTTGCACAAACATCATACCAGTCTTGACTGCTAAATGCCCTCACATTAAATTCACACATCTGCCCTCTGGATTGTCGTGTGACCTATCAGTAAACAACAGGCTCGGTGTAAGAAACTCAGAGCTCCTTCACTGCTATATGTGCCTTGATCCCAGGATTACTCAGCTGGTCTTTGTTGTGAGAGCCTGGGCTAAAGCCAAAGCCCTAACCGCTAGCAGGCAGCTGTCAAACTATGCATTGACTCTGATGGTGCTATACTTCCTGCAAATGCAACATCCACCAGTCATTCCTTCATTACAATGTAGATTTGATACCTGGATCAGAGAGGGACCACATTTGTGTGCCATGAAAGAGCCTAATTCAGAGATTATTGACAACTGGAACTGTTCATTTTTCACAGATGTTACTAAACTTTCTCCCTCACAGAATACCAAAAGTCTGATTCAGTTATTGGAAGagttcttttgcttcttttcaacTGAATTTGACTTTGCTAATTGTGTGAACATTACCATGGCAACACTGAGAAACATCATTGAATTGATGAAGATTGCTCACAAGATTTGCCAGGATCTGAATAGCAGTGTTGACAATCCAAATCCCACTGGAAATAATCTCTTAAGCCTTTTTACAGTTTGTAAATCTtctaaaaagaagaaacattCTCAGCGCCATGATTTCTTCGTTAAGTATCAAAACAAAAGTTCTCAAGCACTGGACACAGGTTGTGTTGACAACCTGAGTAAACCCCACGCAGTTTTTGTGTCTGTTCTAGAGACATTAGAAAGGGAGTATGGATTTCAGTTTAAAGTTAAAAGTTCTGCTAAGATGCCCTGCTCTATTGTGGAAGAATCTGGTGTGCTTAGCAAAATTCAGGGTGTCAAAACATCACTGGTGCCCCAGCTTTCTGGCCACATCTCTGCTGCAGATTGCAGCAACACCAAAAATGAAGCAAGGATATCAgagaaagtaaacaaatttaACAATGAGTTTTCAGCGATTTGCAAAGCCTTTGAAAATACGTGGACCCATTGTCGAAGAGAACAGCGCAGGTCCCTTCAGCCTCAGAAACACGGTAATGGGAACAACGATAATCCAAGCAAAGATAAATTATATGATACAAGATCAGGTCAATTGTTAGAAGGATGTAACAATCAGGTTGAGGAGTTTGCAAATGCTCCTGCCACTGCCCATCCACTTCTCAGTTTCGAATTGAATGTAAGAAGTTTCCCTCAAAAGGAGGTCAAAAATGGTTGTACTGTCCTCATGGAACATGTTGAAAGTAAAGAATCTCAGCTATTTGGAAACTTCTTTTCTGCTTTCAAGAAGTATTTCTTGAGTTTAGTAACAAAGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17797 all species →	RL	RL domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR041252 all species →	Domain	RL domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12271 all species →	POLY A POLYMERASE CID PAP -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0016779 all species →	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0031123 all species →	Biological Process	RNA 3'-end processing	Interproscan
GO:1990817 all species →	Molecular Function	poly(A) RNA polymerase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX12263.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.