Gene detail

Detailed information of PFX13216.1 in Stylophora pistillata

Genomic Location: Spis.scaffold1036:20471...30094
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ATHL1

Transcript

rna-Spis22723_mrna

ATGAGATCACAACGTAACCCAATCTTCCTCTTTGATGTAGCTGCCAACAGGGTAAGACTCGCGTACATCTCTTTGTCTGTGCGTTGTAAGATGTACCTCAGTGGCTGTAGCGTAGCGCTTGCCTTACTTTTAGTGAGTGCTGTATCAACAGTACACTCTATTCCGACAGTTGGAACACCAACTCGCTTCGTCACCGACAAACTGCCAGAACAAGTCAGTCCATCAACGTTACGCTTTGGCAGGAATGGAAACTTCATGGCTTCTGTTGCGAACGGCTATGTAGGCACAGTGATCTACAGCGATACAGTGCATGTATCGGGTGTTTATAATGGCAAGGCTTACTCAAAGAAGTATCCGATTTATCCAATAAACCTTTATGAACATCCTCACAGAGCGCGCATCCCTTCGACAGCCTCTTTCAATTTCAAGATCAGAAGAACCCAGGGGAATACCTCATATGCGCTGGACGTATACGATGGAGTCTTTTATAAGTGGTTCGAGGCGCTCAATTTGACGGTGGAGCAAAGGATTTACGCGCACAGAACCAGGAAGAATCTCTTGATTGTGGAACTTACTGCGAAGAACAACGCGGGAAGAGAATTTTTGATGGACCTTATTCCAAACATGGGATACATCACAAGGGATATTGATTTCTACATGAAAGATTCAAACAGAAGCGAAGCTCTTGCTGGCGTAGGTTTGGTAAAACAGACTGAAGAGGATGGAAGTGTTCGCCCGAACGTAGCAATTGTGTGGAAGTACCCAGATACTAGCCATCCATTGAAAATCACGGCCAGCTCAGACGAGCAGACCTGGTACTACATCACCTCCATAGCCACAAATCTGGACACCAAGTTCAACCCGCTTTCTGAAGCTCTCTTTCAGTGGGATGAAGCCATGTTAGTGAAGGAAAAGCTTCTTGCAGAACATAAAGCTGCTTGGAAAGCATTGTGGGACACTGGCCGGATTGAAATCGAAGGGGATCTAGAAATGGCCCAGGCTCTGTACGGCAGTATGTATTACATTCTAAGCTCCACTCGACACGACTGGCCGTACGGGCTGAGTCCCGGAGGACTTCCGGCTGCAGAGGAGTACATGGGACATACATTCTGGGATCAGGACATATGGATGTACCCCCCTCTAGTGCTGCTACACCCTGACTTGGCCAGAAGTTCTGTGCGATATCGAAAGGAAAGGCTACCTGCAGCCCGCAGAATCGCGAAGGAATACGGTTATAAAGGCGCAATGTTTCCCTGGGAGAGCTCCTTTACTGGCTTAGAGACCTCCCCTGGAGAGGTATATGCCAAGAACCAGAATCACATCACGGGAGACATTGCACTGGCCGCTAAGATGTTATGGCGTGCTACCAAGGATCTCCACTGGCTGCGGGAGGTTGGGTTTCCTCTTGTGTACCAGACTGCAGAGTATTGGGCTAGCCGAGTAGAATATGATTCCGAGAAAGAGAGATACGTCATCAATCACGTGATGCCACCGGACGAGTATCACTACCCAGTTAACAATTCCTTCTTCACTAATGTGGTGGCTAAGATAAATCTGCTGTTTGCCAAAGAAGCTGCTGAAATCCTGGGCAAGAAAGTGCCCGAGCTGTGGTCGACCATTGCGGAAAAGATTTACATCCCCTTTGACAGCAACTATGAATATCACCCTGAGTTTGAGGGATATGTGGCAAATGTGATGGTTAAACAGGCAGATGTTATACTGGTGGGCTTTCCCTTGATGTATCAAATGGATAAACAGgtccGATATAACGATCTGACTTTTTATGAGAGGCTTACAGATCCTGAAGGACCCGCTATGACTCATGCTATGTTTGCAATTGGCTGGCTGGAAGCTGGGGAGGAAAAGAAAGCTGAAACAGCCTTTTTAAAGAACTACGCTAATATCCAGGGTCCCTTTAAGGTGTGGTTAGAAAGGCGAGGTGGTAAAGGGGCGGTGAACTTCATTACAGGAGCTGGAGGATTCCTGCAGGCTGTCGTCTACGGGTATGGTGGTTTCCGGATCAGAAATGATGGCCTGTACTTCAATTCTACCCTTCCTCCCAGGACAACCAAATTGACCCTGAGTTTACACTATCTGGGCTGTTCCCTGAAGTTTGAGCTGCGAAACACCAACGTCACTTTTACGTTGGTGTCCAATGGTCCCATATCACCTGATCTGGAATTGTCGCCTAAGCAAGGTGTATTTGCCCTGAGACAAGGAATACCTGTCACCCTGCAAACAAAGGATGGAGGGGTGCGCAAGCGAGCCTGGCCGAGCCGAGCTAAATCCAAAATCTTTGGCCGAAAGATAGGTACTGGAACATAGAGTGCATTCTAGACCCCAAGAGGAACTTAGTGTCTCTGTGTTTGTAGCTTTGAGACTGCGCAGACGCAGAATCgtctattaaaaaatataatcGATATATGTTACTGCTTGGCTTTAAAAGCTCCCTAAAGCCTCAGTCAAATAGAGAGTATAGAATTCTGCAAACTCCATTTTGGGAAAAGGACCCATTTTACGTGgtttatttttgaaagctttccaGATTTTCTAAGTTTAATTTTCCTACAAGTTGCTACTGCCCTCGGCGATCACATTTTgtcaaaacacaaaatgcaTTATTGTCCTTTAGCAAAATTTGATACtactgacaaggaaaatgacACACAACAATTAATCTTGACCAGAGTTAAGTGATTTCTTCCTCCTGATATATCACTTTAGTCATTTTACTCCTACTGGATCCGTTACATGTTGTTTTTTGACGACCGTGACTTCACTATCTGGTGAATGAAATCTTACAACATAACCTGGTGTTTTGGAGAATACTCCATGCAAGCCATTAACGTTGATACTATATCCTTGACTGTTTGATTGCGGAAGTGAATCAGCCCTTTGCATGGGTTTCAAAAAGGCTGCCCTAAGAACTAGGCCTGATGGTCTTACGAGTGAAGGAACTTTAACTGCTACCCCAGGAACAGTCAAGGGCTGTGAAATGTAATACTGTGGAACTACGACGCCGTTTTGATTGACAATGTTTCCATAACTGAATCTTAAACGCTgaagcattttttgttttatctgtgCGGAATACGCCCTTAGCTCATTCATGGCCTGAAGATGACGTTCTTGCTCTATAAGGGTGGCAGTTTGATCCTCTATGCCCCCATGAATACGCGTCAAGTCTTGGCTCATTTGATCCGATATTTCGTAAGgtgaaatgttttgattttcgTCATGTTTCATCTTCTGTAATTGTGgttctttattttcaattttttcgggTTTCTTCTCTTTGGCGTTATCTTCGTCTTCATTATCATCGTTTGGTCCGTCTTCATCGTCCTCATCGTCAATATTTTTGTCATGGTCATAATTAGAACGCTCCTTTGTTTCAAGGTCATCTTTGTGTAGTAGCtcttcttcgtctgaatcgtcGGGTCTCTCCTTTTTAGCAACATGATTTACGCCACCGCGAACGTTTCCTGGGACAGAGCCATCCGCGTTTCCATCCTGTTCAGAATCgcctgtgattggttggtttgAATCCGAGTCAGTATCAGTTTGCATCAAGGTCTCTAGCAACACCTCATCCTTCATCTTACTCTGAGTGGATCCATTTTCTTCGCTCACTATTTCAAATGAATCTCTTGGTGCACTAGAGGGAACTTTAACAAGAGATGCTTTCGGTGTGCGGCTGTTTCCAAATTTCTGCCAAATGAAAGGGCTTAGCTGAGAAATTTGCGGAGAGCTCTTGCTTACGAAATTGTGGTTTTTTAGCTTAGCTGccttcttttgtttactttctagTTTGTAAGATCTGCTTAGTAAAGAAAAGCTTTCTTCTCTGGCCTCTCTGGCGGTCTGGTTTGCTCTTGAATTCTGTCCAATGAGAAGTTTATGTTTGTCGTTAtcaggtatttttttcttctttaggcTTCCTCCAAGACTCCTCTGCTTCCCTAACTCCTTTAGGCGGTGCCTATGATGTCCTAAAAGAATCATTTTGCAGAGTCAACAAACTTTTAAATAGcaagatttaatttaatttaatttaattta

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03632 all species →	Glyco_hydro_65m	Glycosyl hydrolase family 65 central catalytic domain	Repeat	Interproscan
PF03633 all species →	Glyco_hydro_65C	Glycosyl hydrolase family 65, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005195 all species →	Domain	Glycoside hydrolase, family 65, central catalytic	Interproscan
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR005194 all species →	Domain	Glycoside hydrolase family 65, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11051 all species →	GLYCOSYL HYDROLASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22078	PGGHG, ATHL1; protein-glucosylgalactosylhydroxylysine glucosidase	EC:3.2.1.107	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.