Gene detail

Detailed information of PFX13225.1 in Stylophora pistillata

Genomic Location: Spis.scaffold1034:36177...50285
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

TPI1

ATGGAGAGGAAATTTTTCGTGGGTGGCAACTGGAAGATGAACGGAAATAAAGGAAAAATAGATGAAATTTTAAAGAACTTGGCGTCAAGTGATCTGTCCTCCTTCACGGATGTTGTAGTTTCTCCCCCCTCCATTTATCTGGATTATGTCTGTAAAGCTGTCAAGCCAGGCATTTATGTTTCAGCTCAAAACTGTTACAAAGTCGCCAGTGGAGCTTTCACAGGAGAAATCAGCCCTGCTATGATCAAAGACATTGGCTGTAGCTGGGTGATTTTAGGACATTCTGAAAGGAGAAAGATTTTCCAAGAGAGTGATGAGCTGATTGGCGAGAAGGTAGCTCATGCACTGTCAGAAGGATTAAGTGTGATAGCCTGTATTGGAGAACTTTTGTCAGAGAGAGAGTCTGGAAAAACCACAGAAGTTGTGTCAAGGCAGCTTAAAGCCATTGCTGATAATGTTTGTGACTGGAGTAGAGTGGTTATTGCCTATGAACCAGTTTGGGCCATTGGCACTGGAGTCACGGCTACTCCTCAGCAGGCCCAAGAAGTCCATCATCAACTGAGAGGTTGGCTTACAGATAACGTTTCAGCTGCTGTCGCCAGTTCAACTAGAATAATTTATGGAGGTTCCGTGAACGCCAAGAATTGTAAAGAACTGGCCAAGGAAAGTGATGTTGATGGCTTCCTGGTTGGAGGAGCGTCTCTTAAGCCGGAGTTTGTTCAGATCATCAATGCTAGTAAAGAGGCCAACTGTCCTATCTGTTTGGAAGAATATGTTGAGCCAAAGGTTTTACGTTGCCTTCACAACATTTGTAAGAAATGTCTGAAAGAACTGTTACATCACCATACGTTGAGTTTTCGCTGTCCGATCTGTCGTGCTGTTTGTCCTATTCCTGACCGCGGAGTTGATGGTTTTCCTACAAATGATTATTTAGCACGTTTAATTCGAGATTCGCCGGCCAAGAAAGTTATTCAAGAGATCAGGAAAGTATTGAAAGACTGCAGTGGAAAACTGGCGATCGTGCGAAAAATCTACGAGGAGGCTCGTAATAACATAGAACAACAAGGAGAACTAATCAAGCGCAAAATTCGCGAAGATTTTGAGAACCTCGTCGAAGTTCTACGAAAGCAAGAAGCAGCGTTGTGCGCTGAAGTCGACAATTTAGTGGAGAAAGAAGAAAAGAAACATCCAGCATGTTTTCTAACCTTACAAACAGAGACTTTATTGACTCATATCGAGGGTTCCTTTAAATTACGAGATGCTTTAGACGTAGCAAATGATAAAGAGCATTTGTTAAACAGAATTAGAGATGCAAATGTTGCGTGTACCAAGTTGAGTCATTTGCATTCTGCTTCTGAGACGGAAAAGACGAAAGATTTGTTCGAATTTATGGCAAACAAAGAAGTTCTTCAGTGTGTCAGTGGAAACATGTTTGGAAGTGTAGGCTTGAAGGGACAATTAACATCTTCAAACATGTTAATCAGTTCACCTGACTCGGGTGACTTGGAAAGCCTTGAAGTTCTTAAACCTGGTACAAGATTTCATTCTCTTAATATACCACAGCCTTTAAAACGAAAGTTTCAGCCATTCTCAGTGGCAATAAACGATGAAGGTAATATTGCACTGAGTGATCAAGGAAATCATGCTGTGTTGATATACAGCAAACAAGGAGAGTTTATGGCTTGTATTGGTAGACGAGGATCAAAAGACGGAAGCCTTGAATCGCCAACTGGAGTGACATTTCTAACGAGACATTTGATCGCCGTTGCTGACGGCTGTTTGTTTGGTAATCCAGCACGGATTCAAGCATTTGATAGTTCAGGTAGATTCACACGCTGTCTCGTTAAGTTGGCTTCTAACTCTCATTGGTTCACTCGCATCACTAACGTAAATGAAGAGCAAATTTTAGTCACGTGCACACCTGTAATGCAAGGCCATGAGTCGTGTATTAAGGTGTTCAACACAAGTGGAGAGGAACTCCTTTGTTTTGGGACAAGCCTCTCAGGAAAACTACTTCACCCCTTAAAAGCTGTCGAACTCAACAACGAGTTTTTCGTGTCAGATGTTGACAAGAAAAACAATCGTTGCATGGTGAGTGTGTTTGACCACGAGGGTAAGTACCTGAGGGCATTTGGCGAATGTATGCTGAAAAAAGATCCAAATGAACGTGCCTTCTATCCGCTTGTGATCGCACTAGACGAAGCAGGTAGCAAAGTGCTTGCATACAGTGGGTTGTACAAGTTGGTTCGTTGTTATTTGCCGAATGGTTCATTGGAATCTTACTACAGTACACTGCCTGGAATCACTGACATAGCTGTCACTGATGATGGCAGGGTATTTGTGGTTTGTGGAGGGGCTGGTGAATTTCCTCACAGTGTTCAAATTATATTCCATTACTGA

Transcript

rna-Spis22712_mrna

ATGGAGAGGAAATTTTTCGTGGGTGGCAACTGGAAGATGAAcggaaataaaggaaaaatagatgaaattttaaagaactTGGCGTCAAGTGATCTGTCCTCCTTCACGGATGTTGTAGTTTCTCCCCCCTCCATTTATCTGGATTATGTCTGTAAAGCTGTCAAGCCAGGCATTTATGTTTCAGCTCAAAACTGTTACAAAGTCGCCAGTGGAGCTTTCACAGGAGAAATCAgCCCTGCTATGATCAAAGACATTGGCTGTAGCTGGGTGATTTTAGGACATTCTGAAAGGAGAAAGATTTTCCAAGAGAGTGATGAGCTGATTGGCGAGAAGGTAGCTCATGCACTGTCAGAAGGATTAAGTGTGATAGCCTGTATTGGAGAACTTTTGTCAGAGAGAGAGTCTGGAAAAACCACAGAAGTTGTGTCAAGGCAGCTTAAAGCCATTGCTGATAATGTTTGTGACTGGAGTAGAGTGGTTATTGCCTATGAACCAGTTTGGGCCATTGGCACTGGAGTCACGGCTACTCCTCAGCAGGCCCAAGAAGTCCATCATCAACTGAGAGGTTGGCTTACAGATAACGTTTCAGCTGCTGTCGCCAGTTCAACTAGAATAATTTATGGAGGTTCCGTGAACGCCAAGAATTGTAAAGAACTGGCCAAGGAAAGTGATGTTGATGGCTTCCTGGTTGGAGGAGCGTCTCTTAAGCCGGAGTTTGTTCAGATCATCAATGCTAGTAAAGAGGCCAACTGTCCTATCTGTTTGGAAGAATATGTTGAGCCAAAGGTTTTACGTTGCCTTCACAACATTTGTAAGAAATGTCTGAAAGAACTGTTACATCACCATACGTTGAGTTTTCGCTGTCCGATCTGTCGTGCTGTTTGTCCTATTCCTGACCGCGGAGTTGATGGTTTTCCTACAAATGATTATTTAGCACGTTTAATTCGAGATTCGCCGGCCAAGAAAGTTATTCAAGAGATCAGGAAAGTATTGAAAGACTGCAGTGGAAAACTGGCGATCGTGCGAAAAATCTACGAGGAGGCTCGTAATAACATAGAACAACAAGGAGAACTAATCAAGCGCAAAATTCGCGAAGATTTTGAGAACCTCGTCGAAGTTCTACGAAAGCAAGAAGCAGCGTTGTGCGCTGAAGTCGACAATTTAgtggagaaagaagaaaagaaacatcCAGCATGTTTTCTAACCTTACAAACAGAGACTTTATTGACTCATATCGAGGGTTCCTTTAAATTACGAGATGCTTTAGACGTAGCAAATGATAAAGAGCATTTGTTAAACAGAATTAGAGATGCAAATGTTGCGTGTACCAAGTTGAGTCATTTGCATTCTGCTTCTGAGACGGAAAAGACGAAAGATTTGTTCGAATTTATGGCAAACAAAGAAGTTCTTCAGTGTGTCAGTGGAAACATGTTTGGAAGTGTAGGCTTGAAGGGACAATTAACATCTTCAAACATGTTAATCAGTTCACCTGACTCGGGTGACTTGGAAAGCCTTGAAGTTCTTAAACCTGGTACAAGATTTCATTCTCTTAATATACCACAGCCTTTAAAACGAAAGTTTCAGCCATTCTCAGTGGCAATAAACGATGAAGGTAATATTGCACTGAGTGATCAAGGAAATCATGCTGTGTTGATATACAGCAAACAAGGAGAGTTTATGGCTTGTATTGGTAGACGAGGATCAAAAGACGGAAGCCTTGAATCGCCAACTGGAGTGACATTTCTAACGAGACATTTGATCGCCGTTGCTGACGGCTGTTTGTTTGGTAATCCAGCACGGATTCAAGCATTTGATAGTTCAGGTAGATTCACACGCTGTCTCGTTAAGTTGGCTTCTAACTCTCATTGGTTCACTCGCATCACTAACGTAAATGAAGAGCAAATTTTAGTCACGTGCACACCTGTAATGCAAGGCCATGAGTCGTGTATTAAGGTGTTCAACACAAGTGGAGAGGAACTCCTTTGTTTTGGGACAAGCCTCTCAGGAAAACTACTTCACCCCTTAAAAGCTGTCGAACTCAACAACGAGTTTTTCGTGTCAGATgttgacaagaaaaacaatcgTTGCATGGTGAGTGTGTTTGACCACGAGGGTAAGTACCTGAGGGCATTTGGCGAATGTATGCTGAAAAAAGATCCAAATGAACGTGCCTTCTATCCGCTTGTGATCGCACTAGACGAAGCAGGTAGCAAAGTGCTTGCATACAGTGGGTTGTACAAGTTGGTTCGTTGTTATTTGCCGAATGGTTCATTGGAATCTTACTACAGTACACTGCCTGGAATCACTGACATAGCTGTCACTGATGATGGCAGGGTATTTGTGGTTTGTGGAGGGGCTGGTGAATTTCCTCACAGTGTTCAAATTATATTCCATTACTGAAGACAACCATGAAGAACCAATGAGTTGGTTGCTTGCGGAAAGCAATCTAGATTACATATTTCCccttttattttgattttttcggtttattttgattttttgataacaattttttaaacatcCTATGCCTTTTAAATGAAGTGGTATAAGTAAACACTGAACGCATGCGAGGACTCATTCAGAAAAGCGGGgagtttctttctttcaaagaCCAATGACAATGACTTCCTTGGTCACGAACAGACTTAAAAGCGACTAAAGAGTAAGTGTGGTTACGACTTAAACGCGCTTTTAACGTGAAACGCTgaagtttttcgtttttatttttgcaaaccCGGGTTTAAGAAATTACACCGTATTTTTCTCTCGGCCTGTATGACTGTTTATTCAAACAATGTTCAGCTGTTCAACAAAACCGCTCTCTGATCCATCTTTAGTGTCACCACTAACACTGGATTAacattcattttaaacaaatcgTTTAAAGCGATATCTCGAGTTCTATTGATGTTTTGTACTCGAGGCTGAGTTAGTTTTTTTAGTTTCTGGCATTTAGAGACCTCCATTTTGCACTCCAGTTACCTCGTTAAGTGTGGCACGTGTAAAACACTCAGCACCACAGGGTTTAAAATATCTGATTTTAAGATTATCTGCTTTCGACATTTTGACATAGTgcgcatcgtctgattggtcaattcagtttccaagcagatGTTTTATAAGGTTATAGAGCCCGCATGTAACTAGTTATGTAATAAAAGCAATAGAGCGCATTTTCCGGGCTCTGTGACGAGacaaagccacttgggatgttgggagaacacgaggaaagcttttTAATTACTCGCCTTCGGCTCGCGATCTATGAGTTTTCCTCGTGTTCCCCCAACATCCCAAGTAGCAAGTATCACGCTATAGATCCTGGAGAAATTAGTTGATCAGGGTGAATATAAATCTGTGGTGAATAACAGTAAGTTTTTAACGACTGGCTAtcattttgtatttcattttgtttcacaaTCGCATTCTGAGCTGCCAATCACTTGTCTCACCATCTCTCACGAATTGTTTTAATAGCCTAAATTATACAcgtattttgattggctgttatgattTGTCGGAGAACAGAAGCAAAGATGACGTCatcattaaatttaatttttagaagATAGCGAGTagcttagccaatcagattacagagTTCATAATAGAATGCTGTTAGTTATATACTAAATCAGGAACAAAATTTGACAGAAGGAACTCTTAAAATTTACTAAAGAATGTTCGAATTTGTCATTATGTTGTACAAAAGTTATCTTTAACGAAGGCGCATTTTGAACGAGATTTTATTAGATAATATAATCCACAATTTACAGGCATTTTACGCTGaacattttataatttaatcTGTCGGTACTGAAGGTGATGTTTTGTACTATTCTTTTTCACACAATTTTGTAAATAGCCCATTAAGGAAAACCTGtgtattttttacaattttattcactgtatttacaaaatgttttaaatgtttg

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00121 all species →	TIM	Triosephosphate isomerase	Domain	Interproscan
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035990 all species →	Homologous_superfamily	Triosephosphate isomerase superfamily	Interproscan
IPR020861 all species →	Active_site	Triosephosphate isomerase, active site	Interproscan
IPR022896 all species →	Family	Triosephosphate isomerase, bacterial/eukaryotic	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000652 all species →	Family	Triosephosphate isomerase	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21139 all species →	TRIOSEPHOSPHATE ISOMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004807 all species →	Molecular Function	triose-phosphate isomerase activity	Interproscan
GO:0006096 all species →	Biological Process	glycolytic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006094 all species →	Biological Process	gluconeogenesis	Interproscan
GO:0019563 all species →	Biological Process	glycerol catabolic process	Interproscan
GO:0046166 all species →	Biological Process	glyceraldehyde-3-phosphate biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX13225.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.