Gene detail

Detailed information of PFX14004.1 in Stylophora pistillata

Genomic Location: Spis.scaffold856:34368...55894
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

bicc1-b

ATGAAGATGGCGACAGGCCTCGAGTTCAGCGAAGAAGAAGATTTGCTCGCCGATGAGACTATCGAGGAGCGGGATCCTAATTTAGTGGAGGAGAGATTTCGCGTAGACCGACGTAAACTTGAGCAAATGCTTCAAGCTGCAGTAGCAGGATGTGGACAAACAGGCGAGGAGTTCTTCCAGAAGATTATGGAAGAAACGGCAACCACGATAACATGGCCATCGAAACTCAAGATCGGAGCGAAATCAAAGAAAGATCCCCATATTAAGGTAGCTGGCTTGCCAGACTCTGTACGACAAGCAAAAGAGAAAGTCATGGCAGTCTTAGATACAAAGTCAAACAGGGTGACTCTTAAAATGGATGTCTCTCATACTGATCACTCCCATATTATTGGAAAAGGAGGAGGGAATATTAAGCGAGTTATGCAAGACACTGGATGTCACATTCATTTTCCTGACTCAAACAGAGGAGCTACCAATGAAAAGAGTAATCAAGTGTCTATTGCTGGCCAACCTTTGGGCGTGGAAAGTGCAAGACAGCAAATCCGGGATTTACTGCCTTTGGTTCTGACATTTGATTTACCCTTGAGTGGTAGACTACCAACAGATGCCAATTCACCAACTATCCAGCATATAGCCCAAACCTGCAATGTCTCAATTTCTTTCAAACAGAGACCTAGAGTGGGAAATCAAACAGCAATTATAAGAGGATTACAGCAGCATATTAGTGGCATAAAGGATGCTATTGCCCATCTTGTTGGACACTTAACTGCAAAAATAGCTTCTTCAGTTCCAGTGAACATGCAGATAGATATTGCACCTCAGCATCACTTATTTATAATTGGAAGAAATGGTATTAACATCAAGCAAATCATGCAAAGGACAGGAGCAAATATTTTATTTCCTGATCCCAATGGCACACAAAGGAAAGGCACCGTATTTCTTACTGGAACAGTTGATGCCGTCATTGAAGCAAGATCCCAGCTTATCGATTGTCTGCCCCTGATATTGATGTTTGATTTGAGAGAGGAAGATGGAGATCCAGATATACCAAATTTGAATAAGATAATGGAGGCATATGATGTGTTTGTCAGTGTAAAACCAAAACCCAAGCAGCCAAGCAAGTCTGTGATTGTGAAGAGTGCAGAAAAAAATGTTGCAAGGATGTACATTGCAAGACAAGAAATTCTAGGACTGGATGGTAATGAAAATCTTGCAGTGTCATCAACAATCTCAACATCAAGCTCAGTTGATCACGGCATCTCATCCTCAGACAATATGTCAAGAAATTACTTCAGTAAGCTCAGCCTCAGCTCATCACCCCCTGGTTATGTGTATGGCCACATGAATGGACACACAAGTCCCATGTTGAGTCCTGTTGATCCAGCATCCAACAACCCACATCCATGGTTTACCTCAACCATGGCTCCAACATCGCCCACAATCTCGAATATAATTGGTGGTTTAGTGGCCCCACCAATTAATCCTCTTATGAACCGCTCAACAACGTATCCAAGCAATCCTCCACCTCCCCCTGGCCTTGGTCCACCAGTGACAATGGCTTCTATGCATAACAATGTTCCGGGTGGTTATGTTATAAATTATTCTGGATCTATGCCTAGCTCAGATGGTTACATTGGCGGCATGAGTATAGGTGCAGAACAAAGTCATAAATCACAGGATCACCTGAGTCGAAGAGCTATTAGTCCCCAGGGACAAAGAACACCAAGCCCTGAAGACAGACAGAGTCTAAGTGGCAGTCCTATGAGACGAAGCTCATCTGGAAGTTTGAGTCCTAGAAGTCCTACGTGCACAAGCCCAATGACATTTGAGGATGATGCCAATCATAACAGCGTGGCCAGCGGAAATGACCTGACTGACTCTATCCCATATCACGACGCTAAGACGCACGGCAGCAATGATGGAACCCTAAACCCAGTTGGATCCTCTGCCACCCATGGTCCTAAAAGACAAAGTGTTCAAATATTGTCTGGTGCTAAAAATGTTAGTCTTCGTAATAGTACCTCAAGTCTTAATTCAGATCCCAGTGAACCAGATGACAGCCTTAGTTCGTCTTTGTCGCTCTTGCAGAAACTTCTACCAAATACCCCGGCTCAACCGGCTGATATTTACGACCATATGAAGTCCATGGCGACTGTTGCCATGCAAAAGAAAGTAGTTGTGAATGAAGTGAGGATACCAACAAGCACCTGGAGCGGTCTCGGATTCTCCAAATCAATGCCGGAATCAGCAATTAAAGAATTACTGGATTTCAGGGCCCATAGCAAAGGGAATCTTTTACCTTATAATGGATCAATCAATGGAAGTTTTGAATCTACCGATACATCCTCTCTGTTCAGCTCAGGTCCCAGAGAATCGCGGAATAGAAGTGGATTTGAGTCTACGCTTAGACCAGAACGCCTTGACGAAGAAGAATTACCTGCTGAGTGTAACAGACCAGGAACCATCGGCTCAAGGCGGAATAGCTGTTCATCCACATCTTCTTCAACGTGTTCAGATCTTCGGGATCTGTTCGAGAAAGTTGGTCTGGAAAAGTATCTGTTAACCTTTCAAGAACAAGAGGTGGACTTGCCGACGTTCCTGACTTTGACAGACGACGACCTCAAGGAACTGGGAATAACTGCTTTTGGCGCACGAAAGAAAATGCTTCTGACAATTCAGGACCTGAAAAAGAAACCCAGCCATGAAATAAAGCAACCGAGTTCAGGCTCAACAGACCGTGCCGGACCATCGGGGAGCCTATTTTCAGACAACGATTTTGGACCTCTCCCGTTCTACAGACGTCATCAGATTGGAATAGCAAGTAAAAGTGGGAAATGGTCCCGTTTGTCGAAAGTCCCGGTAACTTAA

Transcript

rna-Spis21878_mrna

ATGAAGATGGCGACAGGCCTCGAGTTCAGCGAAGAAGAAGATTTGCTCGCCGATGAGACTATCGAGGAGCGGGATCCTAATTTAGTGGAGGAGAGATTTCGCGTAGACCGACGTAAACTTGAGCAAATGCTTCAAGCTGCAGTAGCAGGATGTGGACAAACAGGCGAGGAGTTCTTCCAGAAGATTATGGAAGAAACGGCAACCACGATAACATGGCCATCGAAACTCAAGATCGGAGCGAAATCAAAGAAAGATCCCCATATTAAGGTAGCTGGCTTGCCAGACTCTGTACGACAAGCAAAAGAGAAAGTCATGGCAGTCTTAGATACAAAGTCAAACAGGGTGACTCTTAAAATGGATGTCTCTCATACTGATCACTCCCATATTATTGGAAAAGGAGGAGGGAATATTAAGCGAGttatgCAAGACACTGGATGTCACATTCATTTTCCTGACTCAAACAGAGGAGCTACCAATGAAAAGAGTAATCAAGTGTCTATTGCTGGCCAACCTTTGGGCGTGGAAAGTGCAAGACAGCAAATCCGGGATTTACTGCCTTTGGTTCTGACATTTGATTTACCCTTGAGTGGTAGACTACCAACAGATGCCAATTCACCAACTATCCAGCATATAGCCCAAACCTGCAATGTCTCAATTTCTTTCAAACAGAGACCTAGAGTGGGAAATCAAACAGCAATTATAAGAGGATTACAGCAGCATATTAGTGGCATAAAGGATGCTATTGCCCATCTTGTTGGACACTTAACTGCAAAAATAGCTTCTTCAGTTCCAGTGAACATGCAGATAGATATTGCACCTCAGCATCACTTATTTATAATTGGAAGAAATGGTATTAACATCAAGCAAATCATGCAAAGGACAGGAGCAAATATTTTATTTCCTGATCCCAATGGCACACAAAGGAAAGGCACCGTATTTCTTACTGGAACAGTTGATGCCGTCATTGAAGCAAGATCCCAGCTTATCGATTGTCTGCCCCTGATATTGATGTTTGATTTGAGAGAGGAAGATGGAGATCCAGATATACCAAATTTGAATAAGATAATGGAGGCATATGATGTGTTTGTCAGTGTAAAACCAAAACCCAAGCAGCCAAGCAAGTCTGTGATTGTGAAGAGTgcagaaaaaaatgttgcaagGATGTACATTGCAAGACAAGAAATTCTAGGACTGGATGGTAATGAAAATCTTGCAGTGTCATCAACAATCTCAACATCAAGCTCAGTTGATCACGGCATCTCATCCTCAGACAATATGTCAAGAAATTACTTCAGTAAGCTCAGCCTCAGCTCATCACCCCCTGGTTATGTGTATGGCCACATGAATGGACACACAAGTCCCATGTTGAGTCCTGTTGATCCAGCATCCAACAACCCACATCCATGGTTTACCTCAACCATGGCTCCAACATCGCCCACAATCTCGAATATAATTGGTGGTTTAGTGGCCCCACCAATTAATCCTCTTATGAACCGCTCAACAACGTATCCAAGCAATCCTCCACCTCCCCCTGGCCTTGGTCCACCAGTGACAATGGCTTCTATGCATAACAATGTTCCGggtggttatgttataaattattcTGGATCTATGCCTAGCTCAGATGGTTACATTGGCGGCATGAGTATAGGTGCAGAACAAAGTCATAAATCACAGGATCACCTGAGTCGAAGAGCTATTAGTCCCCAGGGACAAAGAACACCAAGCCCTGAAGACAGACAGAGTCTAAGTGGCAGTCCTATGAGACGAAGCTCATCTGGAAGTTTGAGTCCTAGAAGTCCTACGTGCACAAGCCCAATGACATTTGAGGATGATGCCAATCATAACAGCGTGGCCAGCGGAAATGACCTGACTGACTCTATCCCATATCACGACGCTAAGACGCACGGCAGCAATGATGGAACCCTAAACCCAGTTGgatCCTCTGCCACCCATGGTCCTAAAAGACAAAGTGTTCAAATATTGTCTGGTGCTAAAAATGTTAGTCTTCGTAATAGTACCTCAAGTCTTAATTCAGATCCCAGTGAACCAGATGACAGCCTTAGTTCGTCTTTGTCGCTCTTGCAGAAACTTCTACCAAATACCCCGGCTCAACCGGCTGATATTTACGACCATATGAAGTCCATGGCGACTGTTGccaTGCAAAAGAAAGTAGTTGTGAATGAAGTGAGGATACCAACAAGCACCTGGAGCGGTCTCGGATTCTCCAAATCAATGCCGGAATCAGCAATTAAAGAATTACTGGATTTCAGGGCCCATAGCAAAGGGAATCTTTTACCTTATAATGGATCAATCAATGGAAGTTTTGAATCTACCGATACATCCTCTCTGTTCAGCTCAGGTCCCAGAGAATCGCGGAATAGAAGTGGATTTGAGTCTACGCTTAGACCAGAACGCCTTGACGAAGAAGAATTACCTGCTGAGTGTAACAGACCAGGAACCATCGGCTCAAGGCGGAATAGCTGTTCATCCACATCTTCTTCAACGTGTTCAGATCTTCGGGATCTGTTCGAGAAAGTTGGTCTGGAAAAGTATCTGTTAACCTTTCAAGAACAAGAGGTGGACTTGCCGACGTTCCTGACTTTGACAGACGACGACCTCAAGGAACTGGGAATAACTGCTTTTGGCGCACGAAAGAAAATGCTTCTGACAATTCAGGacctgaaaaagaaacCCAGCCATGAAATAAAGCAACCGAGTTCAGGCTCAACAGACCGTGCCGGACCATCGGGGAGCCTATTTTCAGACAACGATTTTGGACCTCTCCCGTTCTACAGACGTCATCAGATTGGAATAGCAAGTAAAAGTGGGAAATGgtCCCGTTtgtcgaaagtcccggtaacttaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013 all species →	KH_1	KH domain	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047549 all species →	Domain	BICC1, first type I KH domain	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR047554 all species →	Domain	BICC1, second type I KH	Interproscan
IPR047553 all species →	Domain	BICC1, third type I KH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10627 all species →	SCP160	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18756	BICC1, BICC; protein bicaudal C	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.