Gene detail

Detailed information of PFX14211.1 in Stylophora pistillata

Genomic Location: Spis.scaffold819:13604...62405
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

MYBL2

ATGTTGCTTCTTCTTAAGGCAGCAGAGTCGGTTGCAAGAGGTTATAATGTTCCTGTCGAGGACGAACCATCCCTGAGGGCTCAGCGACGGAAGAAGAAAATCAACAAAGGAAGATGGACGAAAGACGAGGATGAAAAATTAAAAGAACTTGTGGATGATCTTGGAACTGACAGTTGGAAGGAGGTTGCAAATAATTTCCCTGATCGCACAGATGTTCAATGCCTTCACAGATGGCAGAAGGTACTAAACCCAGAGCTAGTGAAGGGTCCATGGACTAAAGAGGAGGATGACAAAGTCGTAGAACTTGTTCGGAAGTATGGACCAAAACGGTGGTCACTTATTGCTCAGCATCTGAAAGGAAGGATTGGAAAACAGTGCCGTGAAAGATGGCATAATCATCTAAACCCCCAAATCAAGAAATGTGCTTGGACTGAAGATGAAGACAGGATTATTTATGAAGCTCATATTACCATGGGGAATAAATGGGCTGAGATAGCAAAATTGTTACCTGGAAGGACTGATAACTCTATCAAGAACCATTGGAATTCAACCATGAGAAGAAAAGTGGAAAGTGCAGGATATGATCACTATAGAAAGATCAGATACCATTTGTCTGAAAAGCGTTACAGCAAAGGACATCTTCTGTCAGTGAAGAAAGCAGATAAGAGGAGGAGAGAGGAGGCAGTGTATCATTCATCAAATGACGATTCACCAACAATGATTGAAGAAAACAGCTATTCAGGCACCAGAAACAGAAGTAGCTCAGATTTAACAAATATAAAACCAAAACCAGCAAATCAAGATACTCTACAAAGTACAACTGGAAAGAACAACAACAATGGAACAAATCCAGGCTTGATGTCTCCCTTTAGAAATACATTCATATTGTCCCCTGGGTCTTCGGATGCCCTGTTAGATTCTGATCCCTCCTCTTGGGGTGATATCAGTTCATTTGACAAGGGTGGTAGTGTGGGCAAGAATTTGGCATTGTCAAAACTGACATCTCCTGGTACCAGAGGATACAGATTTGATGGGAATTCTATTGCCAGTCTTCAGACGGATGGCGGATCTTTAATACCAATTACTTCACCTGTAATGCAGAACAGATTTAGCACACCACCAACTATTCTAAGACGAGGACGTAAAAGAAAATCTACTGACATGGAGTCCAGTGTCAATACAGAAACATCCTTCAGCAGTCCTAAAGGAGCAACCCCCATTAAGGCCTTGCCGTTCTCACCATCTCAGTTCCTTAATTCTCCTGGAAATTCAAGCAAAGTTCAGACTTCAACTCCAGCCAGTGAAAAATTTAAAGTCAGTTTAACCAACACAACACTGCATACTCCTGGTACACTAGAAGCAAGCTCAGGCGAGGATCCTTTCCGAACTCCACGCATCAGAAGAACTTTGTTGAGTGTATCTCCACGCACTCCAACACCTTTTAAAAATGCCCTCAAAGTGTTGAATGACACAAAAATGGCACATACACCTGACAATTTTGAAGCAGATTTCAATGAAATCATTAAACGAGAGGAGGAAGAAAGTGGTGTTCACTTATCATGCAGTGGGCAAAAAGCATCCTGTAGGGTACGGACTTCCCTTGAGGAAAAATATGCCAAGTTGAGCAAAACAACAGCATCCTCTGCTAATGGATCAGAGGAACAACCAAGTGCAATTAAACAAGAGCAAAGTTACATGATTGTTGAGTGTGTTGTGGAGGATTCAGGTGTTGTCCAGACTTCAGCTTTACCCTCGCCTTCCAAGGATTCGTCATTTATCAAACCATCAGAGATCTTTGGCCAACATAACCCCTTTGCCACACCTAGTTCTGTGATGTCTGAAACTGGACGGCACAGAAGAAAAGGCCATCCCATGCGCATACTGCGATTTCAAGAGACACCACAGAAATCAGCACCAAAGTCCGCTCCACGCACTTTCTTCATGAGCGGGATCAAAGCGGGCAATCCTGAGCGGCAAGATGGGCTCATTTTGCCCTCTCGGGTAGCCAATCAGAACACAGGATTCCCTTCACATTGCCCTTCGTTCCCCTTCCTTCATTTTGTTCTGATGGCAAAGAAATCTACGCAACCAAGTGACCGTGAGCTCTTTGATTCGTTTTTCCCTGGACTGATCGATGATATTGTGAAAGAGGACGAGAATGATAAGGAAACCGGCGAGGCAGCTCGACATTTGCGCAAGGTACTGGAGTATAATGTTCCTGGAGGAAAAAAAAATCGTGGCCTCTCTGTGATTGGATCTCTACGGCACCTTATTAGTCCAGATAAGCTGAAAGAAAAAGCTAAGAAGAATGCAGTTATACTTGGTTGGTGTGTGGAGTGGGCTGGAATTGGGGATATTGCTATCAATGACTTTCTCCTCATAGAGGCCTCAATATACAAACTGCTAAAGAAACATATGGATCAAGAACCATATTATGTTGATGTTTTGAATCTATTTCATGAGGTTACATATCAAACTGCAACTGGACAAGCATTAGACCTCATCACCAAGCCGGGCGAAAATTTTGAGAATTTTACCTTAGAAAGATACAAGGCCATTGTGAAATACAAGACAGCATATTATTCCTTTTACTTGCCAGTTGCTTTGGCAATGTATATGGATGACTATCTGGACTGCTATGGGGACCCTGCGGTTACAGGAAAAGTAGGCACAGATATTGAAGAAAAGAAATGTTCTTGGCTGATTATTCAAGCTCTTCAAAGAATATCTACAGACCAGGTGCAAATTTTGAAGGAGAACTACGGTATAAAAGATTCTGCCTCATCCGAGAAGGTGAAAAAGTTATACCATGAGCTCAACTTGAAGCAGGTGTACAAGAACTTCGAAGAGCAAAGTTACAAGGACATTGTAGAACTTATATCGCAGAAATCTGCCAACCTGCCTGAAGGATTGTTTCTAGAATTTGTGAAGAAAATCTACAAGCGGGATAAATGA

Transcript

rna-Spis21648_mrna

ATGTTGCTTCTTCTTAAGGCAGCAGAGTCGGTTGCAAGAGGTTATAATGTTCCTGTCGAGGACGAACCATCCCTGAGGGCTCAGCGACGgaagaagaaaatcaacaaaggaAGATGGACGAAAGACGAGgatgaaaaattaaaagaacttGTGGATGATCTTGGAACTGACAGTTGGAAGGAGGTTGCAAATAATTTCCCTGATCGCACAGATGTTCAATGCCTTCACAGATGGCAGAAGGTACTAAACCCAGAGCTAGTGAAGGGTCCATGGACTAAAGAGGAGGATGACAAAGTCGTAGAACTTGTTCGGAAGTATGGACCAAAACGGTGGTCACTTATTGCTCAGCATCTGAAAGGAAGGATTGGAAAACAGTGCCGTGAAAGatGGCATAATCATCTAAACCCCCAAATCAAGAAATGTGCTTGGACTGAAGATGAAGACAGGATTATTTATGAAGCTCATATTACCATGGGGAATAAATGGGCTGAGATAGCAAAATTGTTACCTGGAAGGACTGATAACTCTATCAAGAACCATTGGAATTCAACCATGAGAAGAAAAGTGGAAAGTGCAGGATATGATCACTATAGAAAGATCAGATACCATTTGTCTGAAAAGCGTTACAGCAAAGGACATCTTCTGTCAGTGAAGAAAGCAGATaagaggaggagagaggaggCAGTGTATCATTCATCAAATGACGATTCACCAACAATGATTGAAGAAAACAGCTATTCAGGCACCAGAAACAGAAGTAGCTCAGATTTAACAAatataaaaccaaaaccagcAAATCAAGATACTCTACAAAGTACAACTggaaagaacaacaacaatggaACAAATCCAGGCTTGATGTCTCCCTTTAGAAATACATTCATATTGTCCCCTGGGTCTTCGGATGCCCTGTTAGATTCTGATCCCTCCTCTTGGGGTGATATCAGTTCATTTGACAAGGGTGGTAGTGTGGGCAAGAATTTGGCATTGTCAAAACTGACATCTCCTGGTACCAGAGGATACAGATTTGATGGGAATTCTATTGCCAGTCTTCAGACGGATGGCGGaTCTTTAATACCAATTACTTCACCTGTAATGCAGAACAGATTTAGCACACCACCAACTATTCTAAGACGAGGACGTAAAAGAAAATCTACTGACATGGAGTCCAGTGTCAATACAGAAACATCCTTCAGCAGTCCTAAAGGAGCAACCCCCATTAAGGCCTTGCCGTTCTCACCATCTCAGTTCCTTAATTCTCCTGGAAATTCAAGCAAAGTTCAGACTTCAACTCCAGccagtgaaaaatttaaagtcaGTTTAACCAACACAACACTGCATACTCCTGGTACACTAGAAGCAAGCTCAGGCGAGGATCCTTTCCGAACTCCACGCATCAGAAGAACTTTGTTGAGTGTATCTCCACGCACTCCAACACCTTTTAAAAATGCCCTCAAAGTGTTGAATGACACAAAAATGGCACATaCACCTGACAATTTTGAAGCAGATTTCAATGAAATCATTAAACGAGAGGAGGAAGAAAGTGGTGTTCACTTATCATGCAGTGGGCAAAAAGCATCCTGTAGGGTACGGACTTCCCTTGAGGAAAAATATGCCAAGTTGAGCAAAACAACAGCATCCTCTGCTAATGGATCAGAGGAACAACCAAGTGCAATTAAACAAGAGCAAAGTTACATGATTGTTGAGTGTGTTGTGGAGGATTCAGGTGTTGTCCAGACTTCAGCTTTACCCTCGCCTTCCAAGGATTCGTCATTTATCAAACCATCAGAGATCTTTGGCCAACATAACCCCTTTGCCACACCTAGTTCTGTGATGTCTGAAACTGGACGGCACAGAAGAAAAGGCCATCCCATGCGCATACTGCGATTTCAAGAGACACCACAGAAATCAGCACCAAAGTCCGCTCCACGCACTTTCTTCATgagcgggatcaaagcgggcaatcctgAGCGGCAAGATGGGCTCATTTTGCCCtctcgggtagccaatcagaacacaggattcccTTCACATTGCCCTTCGTTCCCCTTCCTTCATTTTGTTCTGATGGCAAAGAAATCTACGCAACCAAGTGACCGTGAGCTCTTTGATTCGTTTTTCCCTGGACTGATCGATGATATTGTGAAAGAGGACGAGAATGATAAGGAAACCGGCGAGGCAGCTCGACATTTGCGCAAGGTACTGGAGTATAATGTTCCTGGAGgaaaaaaaaatcgtggcCTCTCTGTGATTGGATCTCTACGGCACCTTATTAGTCCAGataagctgaaagaaaaagctaAGAAGAATGCAGTTATACTTGGTTGGTGTGTGGAGTGGGCTGGAATTGGGGATATTGCTATCAATGACTTTCTCCTCATAGAGGCCTCAATATACAAACTGCTAAAGAAACATATGGATCAAGAACCATATTATGTTGATGTTTTGAATCTATTTCATGAGGTTACATATCAAACTGCAACTGGACAAGCATTAGACCTCATCACCAAGCCGGGCgaaaattttgagaattttacCTTAGAAAGATACAAGGCCATTGTGAAATACAAGACAGCATATTATTCCTTTTACTTGCCAGTTGCTTTGGCAATGTATATGGATGACTATCTGGACTGCTATGGGGACCCTGCGGTTACAGGAAAAGTAGGCACAGatattgaagaaaagaaatgttcttGGCTGATTATTCAAGCTCTTCAAAGAATATCTACAGACCAGGTGCAAATTTTGAAGGAGAACTACGGTATAAAAGATTCTGCCTCATCCGAGAAGGTGAAAAAGTTATACCATGAGCTCAACTTGAAGCAGGTGTACAAGAACTTCGAAGAGCAAAGTTACAAGGACATTGTAGAACTTATATCGCAGAAATCTGCCAACCTGCCTGAAGGATTGTTTCTAGAATTTGTGAAGAAAATCTACAAGCGGGATAAATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09316 all species →	Cmyb_C	C-myb, C-terminal	Family	Interproscan
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF00348 all species →	polyprenyl_synt	Polyprenyl synthetase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR008949 all species →	Homologous_superfamily	Isoprenoid synthase domain superfamily	Interproscan
IPR015395 all species →	Domain	C-myb, C-terminal	Interproscan
IPR000092 all species →	Family	Polyprenyl synthetase	Interproscan
IPR039702 all species →	Family	Farnesyl pyrophosphate synthase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11525 all species →	FARNESYL-PYROPHOSPHATE SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008299 all species →	Biological Process	isoprenoid biosynthetic process	Interproscan
GO:0004161 all species →	Molecular Function	dimethylallyltranstransferase activity	Interproscan
GO:0004337 all species →	Molecular Function	geranyltranstransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016765 all species →	Molecular Function	transferase activity, transferring alkyl or aryl (other than methyl) groups	Interproscan
GO:0045337 all species →	Biological Process	farnesyl diphosphate biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX14211.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.