Gene detail

Detailed information of PFX14391.1 in Stylophora pistillata

Genomic Location: Spis.scaffold787:13314...25049
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANKZF1

ATGGCGTCTAAAGCAAAGTCGTCCACGGTGTCGCTTTTTGACCAAGAACCAATAAGTGATTTGTTACGAAATGTTCGCATTGTCGGCAAAGATCTCAGAAGTGGAGTCAGCGATGAGAAACAAGAGCAAGTGGTTGAAAAGAAGCATGATAGCAAAAATGAGTTATGTGCTGGAGAGAAACTTGGAATGAGATGTTCTGTGTGCCGAGTTGCTTTTGACTCTGTTGAATTTCAGAGAGAGCATTTCAAGTTAGATTGGCATAGATTTAACTTGAAACAGAAACTTCTGGACAAGCCTATTCTGTCAGAGGAGGCATTTGAGGAAACTATTTCTGGTGAAGTATCAAGTATTTCTGGTTCTGACAGTGATACAGACAATGATGGTGGTGACCTGATGTTAGAGTCAAGTCAGCACAGCAAACTTTCCTTGAATGGTCTCCTGCCTTTTAACACTCCTGGATGGAGGGAGGCAAAACCAGGGATAAATAACATCCCAACCACTCCAGAAGAAACATTGTCAATATTCACAAGTTTAACAAAGGAATGCTACTGGGTTGTGTTGATGACTGCTGGTGGACATTTTGCTGGAGCGGTTTTTAAAGGAAAGGAGGTTTTGACCCACAAAACGTTCCATAGATACACAGTCAGAGCAAAACGAGGAACAGCCCAGAGTGCCAGAGACTCACAGCAAGGCGGGAAGCAACCAAAGTCTGCAGGGGCTAGTTTAAGGAGGCATAACGAAGCTGCCCTCTTACAGGAGGTTCAGGATCTCCTCGAGGCGTGGTCACAGCACGTGGAAAAGTGCCACCGCATTTTCATTCGAACACCAACTTATAACAAAGCGATGTTCTTCGGAGGAAGGAAACCACCTTTCAAGAAAGATGATGCGCGTATCAGAACGATCCCGTTCGTAACTAGAAGACCGACATTTAACGAAGTGAAGCGAGTTCATCAGGAGTTATCCACTGTGCAGTTATTAGGGAAGGACAGTGATGCAGACCTTCAAGACGTTCTGAAGAATTTGACTCTTGATAAACCAAAAGAAAAATTGCCAGAGGTTAATGGCGATGATAAAATTCGTTCTTGGCAAGCGAGTCAAATGGTCGTCAGCAACGATGAAGTAACAATTGATCCACAGGAAAGAATCATTTTACCTGAACACAGTGATAAAGGTCCGCCTGGTTTAGGTTCCACGACCAAACTCCAAGAAGCTTCTAAGAAAACAAAAAAGAAGAAAGCAAAGGTTATCAAGAAGGAGTCTATTGATGGGCTTCAAAATGCAGAAGTTTCTCCAAGGCAACGCTTATGGAATCGGCTTTACTGTGCTATTGTGTCTGCAAACATAGGAGTGATTTCTTTAATTCTTGATATGAGCACCCGAGGTGACATAGAAGGTTGTATAAACACTGAGTCAACTAGCGTACTTCAGGAGACAGACGAGCGTATGGACAAAACTGCCAAGTCTGGTGTGTCACAATTTGAAAATAACGATTCAGTATCACAAGGGGATGAAGAAATTAAGACTCGTGAAAGACACAGGTGTGATCTATATGTGCACACCGGTGATGATTTGAAAAATGATTCAAATATTAACGGTGTAAAATGCACGGAAGCTGATGTAAACGAGGATTTGGCAAGTTCAGGGATCAATAGCGAACGTGAAGGTTCTCCATCGAGGAACGGAGAAATGTCGTCTGCGAGGATTTCGGATGTTATCAATGAACAGTTTGGCGAAGGAGGTGACACGCTTCTTCACGTAGCAGCACGCTCATCGCGAACGGAAATCGTGCTGCGGTTGCTGGAGTGTGGTGCTGATCCTGCTGTGAAGGATGAAAAGGGGAGAACTTCATACGCTGTCGCCGGCAACAAAGACACTCGGAATGAATTCCGTCGGTTTATGGCTAGCTATCCAGATCGTTATGACTATGTCAAAGCACAGATCCCAAGTGCACTTACACCAGAAATGGAAAATGAAAAGGAGAAACGAAATGCAGAAAGAAAGAAAGCGCAGAAAAAGGCACAAAAACAAAGGGCCAAGGAACAAAAGGCTATTGAGCGGATGAAGGAAGAGGAAGAAAAAGAAAAGAGAGCGTATCAAGCTTTGAGTGACCGAGAAAAGCGGGCCCTCGCTGCTGAGAAAAGATTCGCTCAACAACAGGCAGCCAAACAAGCCGGAATAACCAGCAGCTGTGCGTGGTGTAGTAAAAGCCTGGTGGGTCAGGTTCCCTTTGAGCGCCTCGCGTATAAGTACTGCAACACAGCGTGTGTGAAGAATCACAGATTGGACATGGAATCAGAACAAAGATAG

Transcript

rna-Spis21452_mrna

ATGGCGTCTAAAGCAAAGTCGTCCACGGTGTCGCTTTTTGACCAAGAACCAATAAGTGATTTGTTACGAAATGTTCGCATTGTCGGCAAAGATCTCAGAAGTGGAGTCAGCGATGAGAAACAAGAGCAAGTGGTTGAAAAGAAGCATGATAGCAAAAATGAGTTATGTGCTGGAGAGAAACTTGGAATGAGATGTTCTGTGTGCCGAGTTGCTTTTGACTCTGTTGAATTTCAGAGAGAGCATTTCAAGTTAGATTGGCATAGATTTAACTTGAAACAGAAACTTCTGGACAAGCCTATTCTGTCAGAGGAGGCATTTGAGGAAACTATTTCTGGTGAAGTATCAAGTATTTCTGGTTCTGACAGTGATACAGACAATGATGGTGGTGACCTGAtgttagagtcaagtcagcaCAGCAAACTTTCCTTGAATGGTCTCCTGCCTTTTAACACTCCTGGATGGAGGGAGGCAAAACCAGGGATAAATAACATCCCAACCACTCCAGAAGAAACATTGTCAATATTCACAAGTTTAACAAAGGAATGCTACTGGGTTGTGTTGATGACTGCTGGTGGACATTTTGCTGGAGCGGTTTTTAAAGGAAAGGAGGTTTTGACCCACAAAACGTTCCATAGATACACAGTCAGAGCAAAACGAGGAACAGCCCAGAGTGCCAGAGACTCACAGCAAGGCGGGAAGCAACCAAAGTCTGCAGGGGCTAGTTTAAGGAGGCATAACGAAGCTGCCCTCTTACAGGAGGTTCAGGATCTCCTCGAGGCGTGGTCACAGCACGTGGAAAAGTGCCACCGCATTTTCATTCGAACACCAACTTATAACAAAGCGATGTTCTTCGGAGGAAGGAAACCACCTTTCAAGAAAGATGATGCGCGTATCAGAACGATCCCGTTCGTAACTAGAAGACCGACATTTAACGAAGTGAAGCGAGTTCATCAGGAGTTATCCACTGTGCAGTTATTAGGGAAGGACAGTGATGCAGACCTTCAAGACGTTCTGAAGAATTTGACTCTTgataaaccaaaagaaaaattgccaGAGGTTAATGGCGATGATAAAATTCGTTCTTGGCAAGCGAGTCAAATGGTCGTCAGCAACGATGAAGTAACAATTGATCCACAGGAAAGAATCATTTTACCTGAACACAGTGATAAAGGTCCGCCTGGTTTAGGTTCCACGACCAAACTCCAAGAAGcttctaagaaaacaaaaaagaagaaagcaaaggTTATCAAGAAGGAGTCTATTGATGGGCTTCAAAATGCAGAAGTTTCTCCAAGGCAACGCTTATGGAATCGGCTTTACTGTGCTATTGTGTCTGCAAACATAGGAGTGATTTCTTTAATTCTTGATATGAGCACCCGAGGTGACATAGAAGGTTGTATAAACACTGAGTCAACTAGCGTACTTCAGGAGACAGACGAGCGTATGGACAAAACTGCCAAGTCTGGTGTGTCACAATTTGAAAATAACGATTCAGTATCACAAGGGGATGAAGAAATTAAGACTCGTGAAAGACACAGGTGTGATCTATATGTGCACACCGGTGatgatttgaaaaatgattcaaatatTAACGGTGTAAAATGCACGGAAGCTGATGTAAACGAGGATTTGGCAAGTTCAGGGATCAATAGCGAACGTGAAGGTTCTCCATCGAGGAACGGAGAAATGTCGTCTGCGAGGATTTCGGATGTTATCAATGAACAGTTTGGCGAAGGAGGTGACACGCTTCTTCACGTAGCAGCACGCTCATCGCGAACGGAAATCGTGCTGCGGTTGCTGGAGTGTGGTGCTGATCCTGCTGTGAAGGATGAAAAGGGGAGAACTTCATACGCTGTCGCCGGCAACAAAGACACTCGGAATGAATTCCGTCGGTTTATGGCTAGCTATCCAGATCGTTATGACTATGTCAAAGCACAGatcCCAAGTGCACTTACACcagaaatggaaaatgaaaaggagaaacgaaatgcagaaagaaagaaagcgcAGAAAAAGGCACAAAAACAAAGGGCCAAGgAACAAAAGGCTATTGAGCGGAtgaaggaagaggaagaaaaagaaaagagagcgTATCAAGCTTTGAGTGACCGAGAAAAGCGGGCCCTCGCTGCTGAGAAAAGATTCGCTCAACAACAGGCAGCCAAACAAGCCGGAATAACCAGCAGCTGTGCGTGGTGTAGTAAAAGCCTGGTGGGTCAGGTTCCCTTTGAGCGCCTCGCGTATAAGTACTGCAACACAGCGTGTGTGAAGAATCACAGATTGGACATGGAATCAGAACAAAGATAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18826 all species →	bVLRF1	Bacteroidetes VLRF1 release factor	Domain	Interproscan
PF18716 all species →	VATC	Vms1-associating treble clef domain	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047139 all species →	Family	tRNA endonuclease ANKZF1/VMS1	Interproscan
IPR041175 all species →	Domain	VLRF1/Vms1	Interproscan
IPR041540 all species →	Domain	Vms1-associating treble clef domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16036 all species →	ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26089	ANKZF1, VMS1; ankyrin repeat and zinc finger domain-containing protein 1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.