Gene detail

Detailed information of PFX14586.1 in Stylophora pistillata

Genomic Location: Spis.scaffold759:68977...84096
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

rcor2

ATGGCACTCACTACGCTGAACTGGAGTGACGTCCTCAATGAGGTGGACATAAACAAGGCGGTCGAGGTGCTTGAGGTAAAGATTCGTGCAGTGATGAATAAGTTTATGCCGCAAAAATCTGTACGCATGTCATCGCGTGACCCAGTTTGGATGTCCCCATTAGTCAAGTGTATGCTGAGGACTAAGTCCCATATATCTTTAAACAACAAGGAACGTCTGTCTTTATTTAATAAGCGCATTTCTGAGCTGATAACCGAGAACAGAAGAAAACTGGCTGCCATTGGTAGCGGTGAGTGGTGGAAGGGCGTGGACGCCCTATCGCAGCGTCGCAGGTCATCGTTGATAAATTTGGACAAGAACTCTCTAGTTCGTCTGAACGACTACTTCGCCAACCTGTGCTATGATGACACTTACGTTAGACCTAGTGATATGGATATCCCGGACAGTGTAAAGCCCCCGAAAATATCTGAGCGGTGTGTCTGGAATACCTTAGTTCATGTAAAGAAAACGGCAACGGGACCAGACGACCTCCCGTACTGGATCTGGAAAGACTGTGCTGAGCTACTCACACCAATCGTCACTCACGTTTGGAATCTGTCGCTGTCTACTCATACATGGCCAGACTCCTGGAAAAGGGCAAATGTTAATCCTCTCCCCAAAGTGAACATGCCTATAGAGGACTCAGACTACCGTGGTATTAATGTTACTCCCGTTATTGCCCGGTTGTTCGAGAAGGTCGTGTATCGTACACAAGCACAGTCAGTCATTGAGAACAACCTGAGCCACACCCAATTTGCATATAGACAGGCGGGTAGTTGCACAAATGCCTTGCTCGCTATCCAGCACCAGACATACAAGTATTTAGATAGTAGTGACTGTAGCGCAGTGCGAATTTTTACCATGGACTTCAGTAAGGCTTTCGATTTTGTGAACCATGCTATTTTGTCTGCCAAACTGAAACAGCTACCTCTAAATCCGTACATTATCAATTGGTATCATAGTTTCCTCTATGCAAGACAACAACGTGTTGTTAGTTATAATTTTTTAGGACAGTGGAAATCTGTCAATAGAGGAACCACACAAGATAAAAGGGAAAATGGAAATGGACATTCTTACAAAGAGCCCGGGATGAGAGTTGGTGAAGAGTACCAAGCTTCCATACCAGAGCTCGTTACCGAGAACAAGGAGGAAGCTAAACACGATTCGGCTCTCCGCCATAATGCACTTCTTGTTTGGGCCCCAGTTGAAGATATTCCAAATTCAAAATTGGATGATTATGTAACAGTAGCTAAAGACAAGCATGGGTACAATGTTGAACAGGCTCTTGGAATGCTGTTTTGGCACAAGCATAATTTAGATAAATCTCTGACTGATTTGGCTAACTTTACACCATTCCCAGATGAGTGGAGCATGGAAGATAAAATCCTGTTTGAACAAGCTTATAGTTCCCATGGTAAAAGCTTTAAGAGGATTCAACAAATTTTGCCTGACAAATCAGTGGCCACACTGGTGAAATATTACTACTCCTGGAAAAAAACTAGAAGCCGAACCAGTTTGATTGATCGGCAAGCCAAGAAGATGGCTGTTCAAAAGGAACCCATCAATGACCCTGAGAGTGATAACAGCGACTCTAGTGACAGTGACTTTGAGCCAGAAAAAGAGACAAGGCAAGCAAATGGTCAGAGCAAACCAAAGATCATGAACAAGCAGCCTATTGGAGCACCAACAGCAACAAACATTTCTGGTTCTTGTACAAATTGCCGTACACAAACTACTCAACTTCATGCTACTCAGAAGGGGAACATGTGCAGCGCATGTTATCAGTTCTTAAGTAAAAAAGTACAACACAATTTGGCAGAACCAACTCTCAGTCTGGCCTCATTTTACAGGAGAACAGGGACTCTGAGACCAAGGCACGAAGGGAGAGAGACAAGAACTGGCCACCGAGGAAACAAAGTAAAGAGAAAAGCTCCTAAGGGAATGGTTTTGTCACAAGAGTACCTTGTGTCTGTGTCTGGTACCCATGGTGACACCCATGTGCGACCATTAGAGGTGGAAATTGTAAACCTCAAGAGACAGATCCAGGCAAACAAGCAGTCTATAAGTCAACACAAGTACCAGCTGGATAGTGGTGTAGAAACCATGAGACCCGGCGATGTAAGTAGGGTAAATTGTGCCGTCAGACGCTATGGGAAAGACTTCCAAGCCATGGCTGAAGTCTTGGGCAATAAGAGTGTCAGCCAGTGCCGAAATTTTTTCGTCAACTACCGAAGACGGTTTAACCTTCAACAGGTTCTGGAAGAGTATGAAGCGGAACAAGGGATTACAAGCAGCGATAGAAAAGACGACGACTTGCAGGTGCTGCATATGTCGGGATCTCCAGGAAGCAGCGGAAATTCATCACCCAGTCAACCGGACAGGTCATCCCCATCCATTCCCAACCAGGGACTCTCCAGTCAGCCGCCGCCTCTTCTAAAGCCGTCAGGATCACAAGCTCAGCGTCATCCTCCCCCATTACAACCACAGGTTGCAGTCCCACGAACTAGTCAGGGTGGCCTGCAAGGCCCACCTCCACTGATAAAACCAATGGTCCCACCCATACGTCCGCAGCCACTTCATCCCCAAGCAAACCCGATGATGCGGCAGTCCCCGCCAGCTCATCCTCATTTAATTCAACAAATGATGGATCAAAAACCCCTCGGTGGTCCTGTTGGTAGATCTGAATCGCCGCATAGTGCCTCTGGTACCCCTCCCTTGCGGCAGACACGCTCTGGCATGTGA

Transcript

rna-Spis21243_mrna

ATGGCACTCACTACGCTGAACTGGAGTGACGTCCTCAATGAGGTGGACATAAACAAGGCGGTCGAGGTGCTTGAGGTAAAGATTCGTGCAGTGATGAATAAGTTTATGCCGCAAAAATCTGTACGCATGTCATCGCGTGACCCAGTTTGGATGTCCCCATTAGTCAAGTGTATGCTGAGGACTAAGTCCCATATATCTTTAAACAACAAGGAACGTCTGTCTTTATTTAATAAGCGCATTTCTGAGCTGATAACcgagaacagaagaaaactggCTGCCATTGGTAGCGGTGAGTGGTGGAAGGGCGTGGACGCCCTATCGCAGCGTCGCAGGTCATCGTTGATAAATTTGGACAAGAACTCTCTAGTTCGTCTGAACGACTACTTCGCCAACCTGTGCTATGATGACACTTACGTTAGACCTAGTGATATGGATATCCCGGACAGTGTAAAGCCCCCGAAAATATCTGAGCGGTGTGTCTGGAATACCTTAGTTCATGTAAAGAAAACGGCAACGGGACCAGACGACCTCCCGTACTGGATCTGGAAAGACTGTGCTGAGCTACTCACACCAATCGTCACTCACGTTTGGAATCTGTCGCTGTCTACTCATACATGGCCAGACTCCTGGAAAAGGGCAAATGTTAATCCTCTCCCCAAAGTGAACATGCCTATAGAGGACTCAGACTACCGTGGTATTAATGTTACTCCCGTTATTGCCCGGTTGTTCGAGAAGGTCGTGTATCGTACACAAgcacagtcagtcattgagaacaacctgagccacacccaatttgcatatagacaggcgggtagttgcacaaatgccttgctcgctatccagcaccagacatacaagtatttagatagtagtgactgtagcgcagtgcgaatttttaccatggacttcagtaaggctttcgattttgtgaaccatgctattttgtctgccaaactgaaacagctacctctaaatccgtacattatcaattggtatcatagtttcctctatgcaagacaacaacgtgttgttagttataattttttaggacagtggaaatctgtcaatagaggaaccacacaagATAAAAGGGAAAATGGAAATGGACATTCTTACAAAGAGCCCGGGATGAGAGTTGGTGAAGAGTACCAAGCTTCCATACCAGAGCTCGTTACCGAGAACAAGGAGGAAGCTAAACACGATTCGGCTCTCCGCCATAATGCACTTCTTGTTTGGGCCCCAGTTGAAGATATTCCAAATTCAAAATTGGATGATTATGTAACAGTAGCTAAAGACAAGCATGGGTACAATGTTGAACAGGCTCTTGGAATGCTGTTTTGGCACAAGCATAATTTAGATAAATCTCTGACTGATTTGGCTAACTTTACACCATTCCCAGATGAGTGGAGCATGGAAGATAAAATCCTGTTTGAACAAGCTTATAGTTCCCATGGTAAAAGCTTTAAGAGGATTCAACAAATTTTGCCTGACAAATCAGTGGCCACACTGGTGAAATATTACTACTCCTGGAAAAAAACTAGAAGCCGAACCAGTTTGATTGATCGGCAAGCCAAGAAGATGGCTGTTCAAAAGGAACCCATCAATGACCCTGAGAGTGATAACAGCGACTCTAGTGACAGTGACTTTGAGCCAGAAAAAGAGACAAGGCAAGCAAATGGTCAGAGCAAACCAAAGATCATGAACAAGCAGCCTATTGGAGCACCAACAGCAACAAACATTTCTGGTTCTTGTACAAATTGCCGTACACAAACTACTCAACTTCATGCTACTCAGAAGGGGAACATGTGCAGCGCATGTTATCAGTTCTTaagTAAAAAAGTACAACACAATTTGGCAGAACCAACTCTCAGTCTGGCCTCATTTTACAGGAGAACAGGGACTCTGAGACCAAGGCACGAAGGGAGAGAGACAAGAACTGGCCACCGAGGAAACAAAGTAAAGAGAAAAGCTCCTAAGGGAATGGTTTTGTCACAAGAGTACCTTGTGTCTGTGTCTGGTACCCATGGTGACACCCATGTGCGACCATTAGAGGTGGAAATTGTAAACCTCAAGAGACAGATCCAGGCAAACAAGCAGTCTATAAGTCAACACAAGTACCAGCTGGATAGTGGTGTAGAAACCATGAGACCCGGCGATGTAAGTAGGGTAAATTGTGCCGTCAGACGCTATGGGAAAGACTTCCAAGCCATGGCTGAAGTCTTGGGCAATAAGAGTGTCAGCCAGTGCCGAAATTTTTTCGTCAACTACCGAAGACGGTTTAACCTTCAACAGGTTCTGGAAGAGTATGAAGCGGAACAAGGGATTACAAGCAGCGATAGAAAAGACGACGACTTGCAGGTGCTGCATATGTCGGGATCTCCAGGAAGCAGCGGAAATTCATCACCCAGTCAACCGGACAGGTCATCCCCATCCATTCCCAACCAGGGACTCTCCAGTCAGCCGCCGCCTCTTCTAAAGCCGTCAGGATCACAAGCTCAGCGTCATCCTCCCCCATTACAACCACAGGTTGCAGTCCCACGAACTAGTCAGGGTGGCCTGCAAGGCCCACCTCCACTGATAAAACCAATGGTCCCACCCATACGTCCGCAGCCACTTCATCCCCAAGCAAACCCGATGATGCGGCAGTCCCCGCCAGCTCATCCTCATTTAATTCAACAAATGATGGATCAAAAACCCCTCGGTGGTCCTGTTGGTAGATCTGAATCGCCGCATAGTGCCTCTGGTACCCCTCCCTTGCGGCAGACACGCTCTGGCATGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20878 all species →	REST_helical	Helical region in REST corepressor	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF01448 all species →	ELM2	ELM2 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000949 all species →	Domain	ELM2 domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR049048 all species →	Domain	REST corepressor, helical domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR051066 all species →	Family	Transcriptional Regulator and Corepressor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16089 all species →	REST COREPRESSOR COREST PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000118 all species →	Cellular Component	histone deacetylase complex	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX14586.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.