Gene detail

Detailed information of PFX14612.1 in Stylophora pistillata

Genomic Location: Spis.scaffold755:12341...24806
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis21211_mrna

ATGAACCaggcagaaaaaggagaagaggGAAATAGAGAGGAGTGGATGACAAAGTTAACAGACATGCGATTTCAGAGGGCAGACATGAACCGTTTGATCATGGACTACCTTGTAACGGAGGGCTTCAAAGAGGCTGccgagaaatttaaaatagaatcCGGCACGCAGCCTTGTGCTCCGTTGGAAAATCTCGACGAAAGGATTAAAATAAGAGCCGCTGTCCAACGTGGAGACATCGAAGAAGCAATCGCTCTTACAAATAAGCTAAATCCTGAGATACTTGACTGTAAACCGCATCTGTATTTCCATCTTCAGCAACAACGCCTAATAGAGTTAATTCGTGACAAAGACATTGAATCGGCAGTTGATTTTGCCCAGAACCAGCTTGCTGAACAAGGCAAGGAATCTCCCGAGTTTCTGGATGAACTAGAGCGAACTATGGGTTTGCTGGCGTTTGATAACCCAGAGGATTCGCCATTTGGTGAATTGCTGTGTCTTTCACAAAGACAAAAGGTGGCTAGTGAATTGAATGCTGCCATTCTGGAAGCAGAACACAGAGAAACCTCACCCAAGCTGTCTAATTTGTTGAAACTGTTGTTGTGGGCACAAACAGAGTTGGACACTAAGAAAGCAAAGTTCCCCAAAATGAAAGTCCGCTGTGCAAGAGGAAACTTTAGAGCGAAACGGAATCTTGTTCGATTTTCAGGAAGGAGCAAACTCACCATGGATCATCAAGTTCACGAACATAACATGAGTTCTCCGTCCTCTCCTGGTTATTTGCCGCAGTATCTCCTCGGCGGGAATTCACCGGCTGCTTCGCCCTTCCCAAGAGGAAGACCTTTGGCTGGCTCTTCTCTAGGATCATACAATGGAAGCCCTGGTCAGTCAGGAACATTTTCATCACCAAGACAGTACCAGCATCAATTTGGAACACCACTTAGATCTCAAGGACTTGGAAACAAATTAGAAAGGACGCCTGCAAGATCAACCACTGTGGGTTGCACAACTAAAGATTCTGTCAGTGCACCTCCTGTTGAGGGACTTTATGATGCGAGAAGTTCAGATTTCACCAATTCTCCTTTCAACAGAGAACAGCCAATGGATGTGACCATGGCCACTGCTGTAATGACATCTGTTAGAAAGAGTTGTGGTCATTCTACTCCAGGCAGTAATGTCACTATGTCTGGTTTAGATTCACAACATTTCAGTCCTCAGCATGGCCCAGTGTCTTCACCAACACAGACTGATCCATTCTACACTCAAGGGATGGCGATATCAAGTGATGACATACTGGATGAGTGCTGGGTCACAGTATTTGGtttccCACCGCCTGCCTCCTCATTTATCCTGCAACAATTTTCTCAATATGGTAACATCATAAAAAGTGTGACATCTAAAGGGAACTGGTTGCATCTTCAGTATCAGTCAAAACTTCAAGCCAAAAAGGCTCTCAGtaaaaatggaaagatataTGGTAGTGACATCATGGTTGGTGTTGTGCCTTGTATTGACAAGAGTGTGATGGAAACTTTTAGGAAAGAGAATATAAGCACACCATCAACGACAAATAGGAATGAAACCATGGTAACATCTACGACATCGAGTAAACCTGTCCCTGTGCGACCGTTGACTGCTGCTTACCAAGCTGCTCGAAGTGACCATCGGGTTGTCCCAGATGGAGCCAGGACTCCTCAGAAAGAAGCAAATATTTTCTCTAAAGCAATGGAGTATATATTTGGCTGGTGAATAAATGGACCGTAAATTCAGCATAAAAATTATCTGTTTCAcctaaaattatttcaaaatttgcagTGCATGTGAAACTACTCGTGAATAGAAATGATACTTTTGTTATGGGAAGCCAAACTAATCTTagagctttgaaagaaaaatataaagatCCCTGGAATAAAGAACAAAGTAATGCATACATTTTTGCCTTGACGTGGTTTGAGGACATTCTTTGGAACAGTCgtgaaaaagaacagaaatgataaattttcatCTAAACTGGCGTGTGCTGAAGGTAAATGTTAAATTTACAGATGAACACAAGTCCAGAAAAGGGATCCTGGAACGAACCTTTCCTGTGTAAGCATGGATGTTTATTTTGCAATGTTTCTTAGAATACTGCCATTGTTGAAGTTGAAGTCAATTATTCAGATGTATGATTATAGACTTTTCTTCTGTTGTGATGAATGTGCAACTTTTTGTGCTGACCCAGGTATTGTGAGGAAGACTTTTTTCTTAGTAAtagcagcaaataaaatattttttacaaagcCTCTAATGCAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08513 all species →	LisH	LisH	Domain	Interproscan
PF10607 all species →	CTLH	CTLH/CRA C-terminal to LisH motif domain	Domain	Interproscan
PF05172 all species →	Nup35_RRM	Nup53/35/40-type RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013144 all species →	Domain	CRA domain	Interproscan
IPR017389 all species →	Family	Nucleoporin, NUP53	Interproscan
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR024964 all species →	Domain	CTLH/CRA C-terminal to LisH motif domain	Interproscan
IPR007846 all species →	Domain	RNA-recognition motif (RRM) Nup35-type domain	Interproscan
IPR006595 all species →	Domain	CTLH, C-terminal LisH motif	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21527 all species →	NUCLEOPORIN NUP35	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0006607 all species →	Biological Process	NLS-bearing protein import into nucleus	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0006999 all species →	Biological Process	nuclear pore organization	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0031965 all species →	Cellular Component	nuclear membrane	Interproscan
GO:0044613 all species →	Cellular Component	nuclear pore central transport channel	Interproscan
GO:0044615 all species →	Cellular Component	nuclear pore nuclear basket	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX14612.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.