Gene detail

Detailed information of PFX15076.1 in Stylophora pistillata

Genomic Location: Spis.scaffold689:100536...118561
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis20724_mrna

CGGCCATTTTGGAGATACAGTGTTGTCAACACGTTGACTTATTTTCGTCAGGATTTCTTGCACGATCGCTTGGTGAAATATGTCTGATCGAAAAGCTGAGTTAGAGAGAAAGCGGAAGCGCTTAGAAGAAATCAAACGAGCtcgagaagaaaagaaaaagCATGAACAAGAGCAAAGTAAGACAGCTGCCGCACCAAAGGGTGGTGCTAGTGCTACTTCTGCATCAACAGAACCCAAAGAGACTGATattgagagaaaaaagagagaagctGATGAGCTGCTGAAGGGAATTATACCTGATGATGTAATTGATGGCACTGCAGTGTCTCCTCTTGTACCAAGATCTACTAAAAGTGAAGGAGCCAGCCCAAGCAAAGATGTAACATCAAGGCCTTTGGCACAGCAAGAGAAGAAAAGGCCAGTGAAATTGGGTGTATCACAGCTCACTCAGACAAATATTCCACCAAAGGAACCAGTTTTGTATAGCAAAGAAACACAAACTCAAAATGCAGAACCAGAAGAACCACAAGatgaATTTGAGACTCCAGCTGCGTCAAAGCCAAAGGAGACTGAAGCACAACCTGAACCTGAAGATGGAGGAGAAGATGGAAGAGAAGAAGTGCCTGTCATAGAGCTCAGGGATGAACAGAAGGAACACATATTGAATTCTGGAGAATTCAATAAGTTCTTTGAAAAAGCAACAAGAATGATGGAGAGAGCCTTGTGTGAAACAGTTGACATTACATTTGACTACTCTGGTGCTGAAACAGAGGACACTGAAGGAGATACGCAGGCATCTGGTAAACTCTCATTCAGCAGAGAGTTCTTTGACGAGAGGTGGTCAAGGCACAGGACAGTGACTTGCCTTGATTGGTCAACACAGTACCCAGAGCTGTTGGTAGCTTCATATAACAACAATGAAGATGCCCCACATGAGCCTGATGGTGTGGCACTCGTATGGAACATCAAATATCAGAAAGAATCTCCAGAATATGTATTTAACTGTCAGTCTGGTGTGACGTCAGTTACCTTTGCCAAGTTTCATCCTAATTTAATAGTTGGTGGGACATATTCAGGCCAAATTGTATTGTGGGATAACAGAAGCAGTAAAAAGACCCCTGTGCAGAGAACACCTCTCTCCGCCACTGCACACACACATCCGGTTTATTGTGTGAATGTGGTTGGAACTCAAAATGCTCACAATTTGATCAGTGTGTCTACTGATGGAAAGATGTGTTCTTGGAGTCTTGACATGTTGTCACAGCCTCAGGACAGCATGGAGCTTCAATTTAAACAGTCCAAGGCTGTGGCGGTGACGTGTCTATCGTTTTTGGCTGGTGATGTCAATAATTTTGTGGTGGGGAGCGAGGAAGGTTCTGTCTATACAGCCTGTCGACATGGAAGCAAAGCGGGAATCAGTGATATATTTGAAGGTCACTATGGACCAGCGACAGGCATTGATACTCACTCAGCAGCAGGACCTATTGACTTCTCTTATCTGTTTTTGACGTCTTCGTTTGATTGGACCATCAAACTTTGGAGTCACAAGAACCCACGTCCACTGTATTCTTTTGAAGACAATGGTGATTATGTGTACGACGTACAGTGGTCCCCAGTTCATCCTGCTTTGTTTGCTGCCGTGGATGGAACAGGAAGACTGGACCTGTGGAATCTTAATAACGACACAGAGGTACCAACAGCGAGCACCAGCGCCGAATCAATGACGTCACTTAATCGTTTACGATGGACACATTCTGGTCACCAGATTGCCGCGGGTGATGATGACGGTCACGTATTCATCTATGATGTCGGCGAGCAACTTGCTGTCCCAAGAGTGGATGAATGGTCAAGATTTCAAAACACCATTCATGAGATCCAAGCTAACGCCTCATCCAACGTTGGCGAAATAGGCTCTCCCAAAATGTCACCGTCCAAGATGCCATTTAGTTGATAATACTACCTGTAAAATACTGAGGAAATAATGCAGTAGAACTGTAGTATAACAAAACTGTGTTCGCCATTCTAGGCAGAGGACTCAGCTGTTAACTCAGGGTGATTGCAATGAGGGTCGTAACGAGGAATGCAGCAtggtt

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11540 all species →	Dynein_IC2	Cytoplasmic dynein 1 intermediate chain 2	Family	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR025956 all species →	Family	Cytoplasmic dynein 1 intermediate chain 1/2	Interproscan
IPR050687 all species →	Family	Dynein Intermediate Chain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12442 all species →	DYNEIN INTERMEDIATE CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005868 all species →	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0010970 all species →	Biological Process	transport along microtubule	Interproscan
GO:0045503 all species →	Molecular Function	dynein light chain binding	Interproscan
GO:0045504 all species →	Molecular Function	dynein heavy chain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10415	DYNC1I, DNCI; dynein cytoplasmic 1 intermediate chain	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.