Gene detail

Detailed information of PFX15583.1 in Stylophora pistillata

Genomic Location: Spis.scaffold633:119629...144068
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

copg2

ATGCAGTATTTACGGCGAGATAAGAAGGACGAGGAAGATGGTTCGCAGTCGAACCCGTTTCAAAATCTTGACAAGAGTGCCGTTCTCCAAGAGGCTCGCACATTTAACGAAACCCCGATAAATCCGCGAAAATGTATTCACATTCTGACGAAGATTCTGTATGTACTGAACCAGGGGCAACATCTTGGTACAACAGAAGCTACAGAGGCATTCTTTGCAATGACAAAGCTGTTTCAATCAAAAGATGTAATGCTTCGAAGAATGGTGTACTTGGCTATAAAAGAATTAGCAAATATAGCCGAGGACGTGATCATTGTGACCAGCAGTCTGACGAAGGACATGACAGGAAAGGAAGACATGTATCGTGCTAGTGCTATCAGAGCCCTTTGTAAAATCACAGATAGCACCATGCTGCAGGGAATTGAACGATATTTGAAGCAAGCAATTGTAGATAAAAATGCTAGTGTGTCTAGTGCATCTTTGGTTTCTGCATTGCACCTTATGAAGCCAAACTATGATGTGGTGAAGCGCTGGGTAAATGAAGCGCAAGAGGCAGTGTCAAGTGATAATACCATGGTGCAGTACCACGCCTTGGGTCTTTTGTACCATGTGAAGAAGACTGATAGACTGGCTGTCTCTAAACTTATCTTCAAGTACATCAAACAGTCATTGAGATCTCCTTATGCAGTCTGTATGCTGATTCGCATTGCTTCCAAGTATCTTGATGAAGAACCAGAAGTTGTTGATACACCTGTCTATGATTTTCTTGAGAGTTGCCTGAGGCACAAGAGTGAGATGGTGATCTATGAAGCTGCTCGTGCTCTTGTAAACCTGAAAAATCTGAAATCCAGAGATCTATGTCCAGCAATTTCAGTTCTACAGCTGTTCCTGAGCTCACCACGCCCAACCCTGAGGTTTGCGGCAGTGCGCACTTTGAATAAGGTGGCCATGACCCAACCTATGTCCGTCACAACCTGCAACTTGGATCTTGAAAACCTTATTACTGATGTTAATCGCAGCATTGCTACGCTGGCTATCACCACCCTGCTGAAGACTGGAAATGAGGGAAGCGTTGATCGCTTAATGAAGCAGATCTCCTCTTTTATGTCAGAGATCTCAGATGAATTCAAGATTGTTGTTGTTGATGCTATCAGGTCCCTGTGCCTCAAGTTCCCCAGAAAGCATCACGTGATGATGAACTTCCTTTCATCCATGCTCAGAGATGAGGGAGGGTTTGACTACAAGAAAGCCATTGTGGACACAATCATCACCATCATCGAAGAGAATTCTGATGCTAAGGAAGCTGGACTTGGTCATCTGTGTGAGTTCATTGAAGACTGCGAACACACGGTCCTTGCCACAAGAATCCTGCATCTCTTGGGGCGTGAAGGACCGCGCAGCCAGAATCCTTCAAAATACATCCGCTTCATTTATAACCGAGTCATCTTAGAGAATGCTGCCGTAAGAGCTGCGGCTGTGACATCTCTTGCCAAATTTGGAGCTCACTGTGACAGCTTGTGTTCAAGCATGTTGGTCCTTCTGTCTAGATGTCTTTTGGATACCGACGATGAAGTGAGAGACAGGGCGACATTTTATGTAAATGTTTTGAAGGAGAAAGAGAAGGCCTTGTCATCAGGCTACATCTTGAACGGCCTCCAAGTGTCCATTGTTGGATTGGAGAGAGCCCTGCATGCTTATGTCAAAGACTCCTCACAGACTGCGCCATTTGATCTCAAGACTGTTCCCTTGGCAACCACGCCCATGCAAGATCAGGTCGTAAAACCTGGAAAAGCTGCAATCGAGACGCCTTCTGCTCCAACCAAAGCTGCGGCACCCGTGGCAGTCACCAGACAGGACGTGTATGCTGAACAACTGGCTGCTATCCCTCAGTTTTCCAGGCTTGGTCCATTGTTCAGGTCCTCGCCGAAACCTGTAGAACTGACTGAATCTGAGACAGAATACGTTGTAAACTGTGTCAAACACGTCTTCAAGGATCACATCGTCTTTCAGTTTGACTGCACAAATACACTGAATGACCAGATCCTGGAGAATGTCCAGGTGGAAATGGAGCCGAGTGATGGCGAGTTTGAAGTGGTGACCTACGTACCACGTCCGTCGCTTCCTTACAACTCACCTGGGACAACCTACACACTGGTTAAACTCCCTGAAGATGCTTCATCAGTAACTTGCACATTTACAAACACACTGAAATTTGTGGTTAAAGACTGCGATCCAAGCACGGGTGAACCAGATGAAGAAGGCTACGAAGACGAATATGTGCTTGAAGACATTGATGTGCTCGTGGCAGATCACGTACAGCGCGTGCACAAGACAAACTTCCTGGCCTCCTGGGATGAGATTGGTGACGAGTGTGAAATGCAAGACACTTATGCTCTGACTCAGATGACCAGTTTGGAAGAAGCTGTCAAACAGATTATCGACTACCTCGGCATGCAGCCATGTGAACGTTCCGATAAGGTCAATTCGGAAAAGAATTCTCACGCCCTGCTATTAGCGGGGGTGTTCCGAGGCGGTCACGACGTCTTGGTCCGAGCCCGACTGGCTTTCGACCATGGAGTGACTATGAACATAACTGTTCGTAGTGACGATCCTGTAGTTAGCGAGGTGGTGTTGTCAGCCGTGGGATAA

Transcript

rna-Spis20197_mrna

CCATTTTGAAGATTCACCAAGTTGGCGAGATTAGGTCGAATTTTGAGGCAAAATGCAGTATTTACGGCGAGATAAGAAGGACGAGGAAGATGGTTCGCAGTCGAACCCGTTTCAAAATCTTGACAAGAGTGCCGTTCTCCAAGAGGCTCGCACATTTAACGAAACCCCGATAAATCCGCGAAAATGTATTCACATTCTGACGAAGATTCTGTATGTACTGAACCAGgggcaACATCTTGGTACAACAGAAGCTACAGAGGCATTCTTTGCAATGACAAAGCTGTTTCAATCAAAAGATgtaaTGCTTCGAAGAATGGTGTACTTGGCTATAAAAGAATTAGCAAATATAGCCGAGGACGTGATCATTGTGACCAGCAGtctgACGAAGGACATGACAGGAAAGGAAGACATGTATCGTGCTAGTGCTATCAGAGCCCTTTGTAAAATCACAGATagCACCATGCTGCAGGGAATTGAACGATATTTGAAGCAAGCAATTGTAGATAAAAATGCTAGTGTGTCTAGTGCATCTTTGGTTTCTGCATTGCACCTTATGAAGCCAAACTATGATGTGGTGAAGCGCTGGGTAAATGAAGCGCAAGAGGCAGTGTCAAGTGATAATACCATGGTGCAGTACCACGCCTTGGGTCTTTTGTACCATGTGAAGAAGACTGATAGACTGGCTGTCTCTAAACTTATCTTCAAGTACATCAAACAGTCATTGAGATCTCCTTATGCAGTCTGTATGCTGATTCGCATTGCTTCCAAGTATCTTGATGAAGAACCAGAAGTTGTTGATACACCTGTCTATGATTTTCTTGAGAGTTGCCTGAGGCACAAGAGTGAGATGGTGATCTATGAAGCTGCTCGTGCTCTTGTAAACCTGAAAAATCTGAAATCCAGAGATCTATGTCCAGCAATTTCAGttctacaGCTGTTCCTGAGCTCACCACGCCCAACCCTGAGGTTTGCGGCAGTGCGCACTTTGAATAAGGTGGCCATGACCCAACCTATGTCCGTCACAACCTGCAACTTGGATCTTGAAAACCTTATTACTGATGTTAATCGCAGCATTGCTACGCTGGCTATCACCACCCTGCTGAAGACTGGAAATGAGGGAAGCGTTGATCGCTTAATGAAGCAGATCTCCTCTTTTATGTCAGAGATCTCAGATGAATtcaagattgttgttgttgatgctATCAGGTCCCTGTGCCTCAAGTTCCCCAGAAAGCATCACGTGATGATGAACTTCCTTTCATCCATGCTCAGAGATgagGGAGGGTTTGACTACAAGAAAGCCATTGTGGACACAATCATCACCATCATCGAAGAGAATTCTGATGCTAAGGAAGCTGgaCTTGGTCATCTGTGTGAGTTCATTGAAGACTGCGAACACACGGTCCTTGCCACAAGAATCCTGCATCTCTTGGGGCGTGAAGGACCGCGCAGCCAGAATCCTTCAAAATACATCCGCTTCATTTATAACCGAGTCATCTTAGAGAATGCTGCCGTAAGAGCTGCGGCTGTGACATCTCTTGCCAAATTTGGAGCTCACTGTGACAGCTTGTGTTCAAGCATGTTGGTCCTTCTGTCTAGATGTCTTTTGGATACCGACGATGAAGTGAGAGACAGGGCGACATTTTATGTAAATGTTttgaaggagaaagagaaggCCTTGTCATCAGGCTACATCTTGAACGGCCTCCAAGTGTCCATTGTTGGATTGGAGAGAGCCCTGCATGCTTATGTCAAAGACTCCTCACAGACTGCGCCATTTGATCTCAAGACTGTTCCCTTGGCAACCACGCCCATGCAAGATCAGGTCGTAAAACCTGGAAAAGCTGcAATCGAGACGCCTTCTGCTCCAACCAAAGCTGCGGCACCCGTGGCAGTCACCAGACAGGACGTGTATGCTGAACAACTGGCTGCTATCCCTCAGTTTTCCAGGCTTGGTCCATTGTTCAGGTCCTCGCCGAAACCTGTAGAACTGACTGAATCTGAGACAGAATACGTTGTAAACTGTGTCAAACACGTCTTCAAGGATCACATCGTCTTTCAGtttgacTGCACAAATACACTGAATGACCAGATCCTGGAGAATGTCCAGGTGGAAATGGAGCCGAGTGATGGCGAGTTTGAAGTGGTGACCTACGTACCACGTCCGTCGCTTCCTTACAACTCACCTGGGACAACCTACACACTGGTTAAACTCCCTGAAGATGCTTCATCAGtaacttGCACATTTACAAACACACTGAAATTTGTGGTTAAAGACTGCGATCCAAGCACGGGTGAACCAGATGAAGAAGGCTACGAAGACGAATATGTGCTTGAAGACATTGATGTGCTCGTGGCAGATCACGTACAGCGCGTGCACAAGACAAACTTCCTGGCCTCCTGGGATGAGATTGGTGACGAGTGTGAAATGCAAGACACTTATGCTCTGACTCAGATGACCAGTTTGGAAGAAGCTGTCAAACAGATTATCGACTACCTCGGCATGCAGCCATGTGAACGTTCCGATAAGGTCAATTCGGAAAAGAATTCTCACGCCCTGCTATTAGCGGGGGTGTTCCGAGGCGGTCACGACGTCTTGGTCCGAGCCCGACTGGCTTTCGACCATGGAGTGACTATGAACATAACTGTTCGTAGTGACGATCCTGTAGTTAGCGAGGTGGTGTTGTCAGCCGTGGGATAAAATATTTTCTGGTCGTTTGGTTCAGGCTGATTTGACAGTGAATTCAGACATAATGTGTACTAAGCGTTGTAATTAACAGTCTTAGAACCAGCTAAAGGTTTTCGTAGTAAGAAGTCAAAGATTTTTTGAAGATTTCCGAAAAATTAAcggattgttttcttttatgatGCAGGGAGAGATATCGGGTGTCAAGGATTTTTTTccggtctgaattttttttttttttttt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF08752 all species →	COP-gamma_platf	Coatomer gamma subunit appendage platform subdomain	Domain	Interproscan
PF16381 all species →	Coatomer_g_Cpla	Coatomer subunit gamma-1 C-terminal appendage platform	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR037067 all species →	Homologous_superfamily	Coatomer, gamma subunit, appendage domain superfamily	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR009028 all species →	Homologous_superfamily	Coatomer/calthrin adaptor appendage, C-terminal subdomain	Interproscan
IPR013040 all species →	Domain	Coatomer, gamma subunit, appendage, Ig-like subdomain	Interproscan
IPR012295 all species →	Homologous_superfamily	TBP domain superfamily	Interproscan
IPR017106 all species →	Family	Coatomer gamma subunit	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013041 all species →	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR032154 all species →	Domain	Coatomer subunit gamma, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10261 all species →	COATOMER SUBUNIT GAMMA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0030126 all species →	Cellular Component	COPI vesicle coat	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005793 all species →	Cellular Component	endoplasmic reticulum-Golgi intermediate compartment	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0009306 all species →	Biological Process	protein secretion	Interproscan
GO:0072384 all species →	Biological Process	organelle transport along microtubule	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17267	COPG; coatomer subunit gamma	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.