Gene detail

Detailed information of PFX15601.1 in Stylophora pistillata

Genomic Location: Spis.scaffold631:5452...26952
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

plekhm3

ATGTTTTCTGGATGGAAAAAGACAGGGGTTGCAGAAACTGAGGATGATCTAATAAGAAATGCAGAGATCAAGAGAAGACTTATAAGTGAACTCTCCCTAGCAGTGAAAGAGCTTCAGAGAAAACACATTGGAGCTGACTTGGATGTGGAAAGGAATGATGAGCATGCTTTAATGATCAGTACTTTACTAGAAGCTGTCTATCTTCATGGATTTCAAGATCATGGCATTAAGCTATCAAATTTTTACAATCTCCTTGGAAAAATATCAACAGAAGCCATGCCAACCCATTCATTTTGGTCTTTGATTGCAAATTTCACTCACAAAGATGTGTTAAATGAGCTGGAACATCTCTCTCAGATCCACACTCCTGTGGGAAGATGTCGGGCATGGATTCGTCTTGCTTTAAACGATGGGTTAATGGAAAGTTACCTTGAAGCCATTCTGATGGACAAAAATAAATTGCTATATTTCTACAAGGGTTCATCTTTTATGCTGGATTCAGAACTCCCTTCAATAATGAAAACCTTTTTGCAAGGCCTGGGGGAATTCAAATTTGACTTCAATTACAACACACCTGGATTGAACTCGTGGTCTGGTGATACCCTGGCTCTCTGCGGAATTTGGCAATTACCTAAAGTGGCTCCTCGGTCACTTCCACTTACCTACACAGGTGTGCCTGTTCATGGAGGGTTAGCTGTTCCAGTCAGTATTCCAGGAGATCAGCTTGTAGTTCAATATGAAGCCTCTAGTAGTTCCTTTGGTTCTAGCACGGCTGAGGTAGCGGAACTTGCAGGTTGTAGCCTGGAAGAGAGTACTGAAATAAAGCGAAGAACTCAAGCATTGCAAACAGTGGCAGCTGTTGAGAGAATGATGACAGAGGATGCAGATGACGGAGGAAGTTTTCATGATTCTCCCTTCACGGAGAAGGATGTAGATGGACAAGCTGAAGGAAGTGATCAATATCCAGCTGCAGTAGATATTCCAAGTGAAGATGACCATCGTCTCCAGCGAGACACCTGCAGTCCAACTCCTTTAGGAGGCAGCAACAAATTGGGAATGTCTAGTGGCTGGTCATCGACATTTGAAACCCAGGCTGCATTACATGTAGATGCTGTTGATGGCAATAGCAATGATCAGATGGACAGTGCTGCCGCACTGCCCAGTTTTCAGGAAAAGCCTAGTCCCAGAACCCCAACCAAGACACAGGCACCCAGTTTTGGGACTCTGTTAAGGGACTACAGTGTCCAGGGAAGGAAGAGATTTGAGTCCCCTGTGTATGTTGATGGTGCAGCACCAACACAACCACAACAGGTGCAAAGTAGTCAGATTCCTGTAACAAAGAAGAAACTGGAAATGCAACCTTCTGAAACTTTCACAGCTTCTGGTTTTGAAGTTTTGTCAAAAAGTGGTTCAGTTCACTCAAACCATGGTGATGATCGATCAGCAGAGTTAATGACATTGGTGACAGAGATAGCCACTGAGCAGGGGTTGGACAACCAAAACTATCAATGCAAAGGATGTGGTAGGAACATAGGAATGATCTATGGACAATTCAAAGTCTGTAACTATGATGCATGCTACTATTGTTTTGAATGTCATGAAAATGAAGAACATGTCATACCTGCGAGGGTCTTTCACAACTGGGATCTACGTAAACACCAAGTTGCTAAACAGTGCAAGTTGTTCCTGATGCACATAGAAGAGGATCCTTTGTTTAATATTGATGAAACCAATCCCACGTTGTACAATGTTATCAAGGAGTTGCATGAAATTAAGGTATTAAGGTCACAGCTAAAGCATTTAAAAGGCTTCATTTTTACTTGTAAAGATCAAATAGCAGAGGATGTGAGGAGGAGAATTTGGCCTCGGGAATACCTTTGGGATGATATCCATCAGTATTCCTTACTGGATTTGATTCAAGTACAATCTGGGCAGCTGGCTCATCATCTCAAAAAGATAATTGCTCACTGTACAAAGCATGTGTATAAGTGTAAGCTCTGTTGTCAAAAAGGATTTTTCTGTGAAATATGCAACAACCCAAAAATCATGTACCCATTTGAAGTGAAAACTACAACTCAGTGTGGAAAATGCAAGGCTCTTTACCACAAAGCTTGTATTGCTGAGAGAAAATGTCCCAAGTGTATACGAATAAGAAAGAAGCAATCTGCAGGAACAAGAACTGCAGCTGTTTTGGAGTTTGATTCACCTTGGTAG

Transcript

rna-Spis20166_mrna

ATGTTTTCTGGATGGAAAAAGACAGGGGTTgcagAAACTGAGGATGATCTAATAAGAAATGCAGAGATCAAGAGAAGACTTATAAGTGAACTCTCCCTAGCAGTGAAAGAGCTTCAGAGAAAACACATTGGAGCTGACTTGGATGTGGAAAGGAATGATGAGCATGCTTTAATGATCAGTACTTTACTAGAAGCTGTCTATCTTCATGGATTTCAAGATCATGGCATTAAGctATCAAATTTTTACAATCTCCTTGGAAAAATATCAACAGAAGCCATGCCAACCCATTCATTTTGGTCTTTGATTGCAAATTTCACTCACAAAGATGTGTTAAATGAGCTGGAACATCTCTCTCAGATCCACACTCCTGTGGGAAGATGTCGGGCATGGATTCGTCTTGCTTTAAACGATGGGTTAATGGAAAGTTACCTTGAAGCCATTCTGATGGACAAAAATAAATTGCTATATTTCTACAAGGGTTCATCTTTTATGCTGGATTCAGAACTCCCTTCAATAATGAAAACCTTTTTGCAAGGCCTGGGGGAATTCAAATTTGACTTCAATTACAACACACCTGGATTGAACTCGTGGTCTGGTGATACCCTGGCTCTCTGCGGAATTTGGCAATTACCTAAAGTGGCTCCTCGGTCACTTCCACTTACCTACACAGGTGTGCCTGTTCATGGAGGGTTAGCTGTTCCAGTCAGTATTCCAGGAGATCAGCTTGTAGTTCAATATGAAGCCTCTAGTAGTTCCTTTGGTTCTAGCACGGCTGAGGTAGCGGAACTTGCAGGTTGTAGCCTGGAAGAGAGTACTGAAATAAAGCGAAGAACTCAAGCATTGCAAACAGTGGCAGCTGTTGAGAGAATGATGACAGAGGATGCAGATGACGGAGGAAGTTTTCATGATTCTCCCTTCACGGAGAAGGATGTAGATGGACAAGCTGAAGGAAGTGATCAATATCCAGCTGCAGTAGATATTCCAAGTGAAGATGACCATCGTCTCCAGCGAGACACCTGCAGTCCAACTCCTTTAGGAGGCAGCAACAAATTGGGAATGTCTAGTGGCTGGTCATCGACATTTGAAACCCAGGCTGCATTACATGTAGATGCTGTTGATGGCAATAGCAATGATCAGATGGACAGTGCTGCCGCACTGCCCAGTTTTCAGGAAAAGCCTAGTCCCAGAACCCCAACCAAGACACAGGCACCCAGTTTTGGGACTCTGTTAAGGGACTACAGTGTCCAGGGAAGGAAGAGATTTGAGTCCCCTGTGTATGTTGATGGTGCAGCACCAACACAACCACAACAGGTGCAAAGTAGTCAGATTCCTGTAACAAAGAAGAAACTGGAAATGCAACCTTCTGAAACTTTCACAGCTTCTGgttttgaagttttgtcaaaaaGTGGTTCAGTTCACTCAAACCATGGTGATGATCGATCAGCAGAGTTAATGACATTGGTGACAGAGATAGCCACTGAGCAGGGGTTGGACAACCAAAACTATCAATGCAAAGGATGTGGTAGGAACATAGGAATGATCTATGGACAATTCAAAGTCTGTAACTATGATGCATGCTACTATTGTTTTGAATGTCATGAAAATGAAGAACATGTCATACCTGCGAGGGTCTTTCACAACTGGGATCTACGTAAACACCAAGTTGCTAAACAGTGCAAGTTGTTCCTGATGCACATAGAAGAGGATCCTTTGTTTAATATTGATGAAACCAATCCCACGTTGTACAATGTTATCAAGGAGTTGCATGAAATTAAGGTATTAAGGTCACAGCTAAAGCATTTAAAAGGCTTCATTTTTACTTGTAAAGATCAAATAGCAGAGGATGTGAGGAGGAGAATTTGGCCTCGGGAATACCTTTGGGATGATATCCATCAGTATTCCTTACTGgattTGATTCAAGTACAATCTGGGCAGCTGGCTCATCATCTCAAAAAGATAATTGCTCACTGTACAAAGCATGTGTATAAGTGTAAGCTCTGTTGTCAAAAAGGATTTTTCTGTGAAATATGCAACAACCCAAAAATCATGTACCCATTTGAAGTGAAAACTACAACTCAGtgtGGAAAATGCAAGGCTCTTTACCACAAAGCTTGTATTGCTGAGAGAAAATGTCCCAAGTGTATACGAATAAGAAAGAAGCAATCTGCAGGAACAAGAACTGCAGCTGTTTTGGAGTTTGATTCACCTTGGTAGCAGCACACAACAAAGGACACAAGTTTTcattaaagtgcatatgacatgAAATTTTACTCATGTTTCTTGTggttggat

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02759 all species →	RUN	RUN domain	Family	Interproscan
PF13901 all species →	RH_dom	Rubicon Homology Domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037213 all species →	Homologous_superfamily	RUN domain superfamily	Interproscan
IPR025258 all species →	Domain	Rubicon Homology Domain	Interproscan
IPR004012 all species →	Domain	RUN domain	Interproscan
IPR047326 all species →	Domain	PLEKHM1, RUN domain	Interproscan
IPR051366 all species →	Family	Differentially Expressed in FDCP 8 Homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12326 all species →	PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for PFX15601.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23282	PLEKHM1; pleckstrin homology domain-containing family M member 1	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.