Gene detail

Detailed information of PFX15649.1 in Stylophora pistillata

Genomic Location: Spis.scaffold626:92355...104824
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00687 all species →	Ribosomal_L1	Ribosomal protein L1p/L10e family	Domain	Interproscan
PF21051 all species →	ARMC9_LisH	ARMC9, LIS1 homology motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023674 all species →	Homologous_superfamily	Ribosomal protein uL1-like	Interproscan
IPR028364 all species →	Family	Ribosomal protein uL1/ribosomal biogenesis protein	Interproscan
IPR040369 all species →	Family	LisH domain-containing protein ARMC9	Interproscan
IPR016095 all species →	Homologous_superfamily	Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domain	Interproscan
IPR048957 all species →	Conserved_site	ARMC9, LIS1 homology motif	Interproscan
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14881 all species →	LISH DOMAIN-CONTAINING PROTEIN ARMC9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0097542 all species →	Cellular Component	ciliary tip	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14775	UTP30, RSL1D1; ribosome biogenesis protein UTP30	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.