Gene detail

Detailed information of PFX15913.1 in Stylophora pistillata

Genomic Location: Spis.scaffold597:57693...83535
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PNKP

ATGGAGTGCTTAGTAATCTGCTGCCATAAAAGCCATGATCCAATACTCCTTCCAGATGGAGAGACTGTGTTACTTGGCAGAGGCCCTCTGACCCAAATAACAGACAAGAAATGCTCCAGAAATCAAGTTCAGCTCACAGCAAATTATTTAAAAAAGGAAGTGCTTGTGAAGCAGCTGGGAAACAATTCAAGTTCTGTTGGAGGAGTGAATCTGGGCAAAGGAGACTCAACATTTCTTGGTCCTGGAGGAACTTTCTGTCTCCTTGGAGACAAGTATTCTCACTTCATCTATTTCAGTAGACTACAACCTTCTGAAAGAGAAAGAGCCGATGATGAACCTAAATCCAAGAAAGCTTGTTTTGATACTTTAAGTGATTCAGATGATAATCTCACATCTGAAGACCTTGAGGATATACGCCGTGAATTTGGCCAACAGATGGTGGAAAAGATACAACTGCAAAAGAACAAAAAAGTTGACCGTTCAAAAGAGGATCTAGCCTTTTGTAATTTGAGGGATTCATGGAAGGATATTGGAGAGGAGCTAATTGTTTTCACCAGTAGAGGGTCAGAAGCAAGTTCTAAGATTGCTGGTTTTGATTTGGATGGAACACTTATCACCACTCAGTCTGGGAGGGTGTTTCCCACCTCAGCCACAGATTGGCAAATTCTCTGTCCAGAAATTGTTCCAAAACTGAAAGGTCTTTGGCACAATGGATACAAGATTGTCATTTTTACAAACCAGCTTGGCATTTCCAGAAAGCAGTTAAAGGTAGCAGACTTTAAGTCTAAGATTGAGCAGATCATTAGTTACCTCAAAGTACCTGTGCAGGTTTTAATTGCTACAGGAAATAGCATCTACCGGAAGCCGCTCACTGGTATGTGGAAGCACTTAGTCACACAGGATGCCACTTTGTCACCAGAAGAGAATGGAACATGTGTAACAACAGGGAAATTAAAAGCAATCAAAATCAATAACGAAAATCAGAACAAATTAATGCCAGCATATAATGGAACTATTCAATCTGAACCCTCAGAGTGGATCAGCAGTATGGTAATAGTTGGCAAACCTCAGAAGATTCGAATCTGTCTGGACCCAAAAGACCTGAACCGTGCCATACAACGCCCCAAATTTCGAATGCCAGTGTTGGAAGAGCTGTTACCAGACCTCAACAAAGCCAGAATCTTTAGCTCATTAGATGCCAAAGATGGATTCTATCAAGTTGGCCTTGACCAAGAGAGCAGTAAACTAACCACTTTCTGGACACCCCTAGGAAGATACCAGTACTTAAGAATGCCCTGTGGTATAAGTCTAGCGCCAGAAGCCTTTGAAAGCAGACTACAAGAATGTCTTGCCGACCTGCCTGGTGTGAAAGTCATCAGAGATGATATTCTTGTTGTTGGTTATGGTGTAAACGACTCGGAAGCCCTTCTTAATCGTGATCAGAATGTGGTCCACCTACTTGAACAAGCCAAACAAGTACATCTGAAACTCAACACGAACAAAGTTAAGCTTCGACAGGCAGAAGTTAAATTCATGGGTCATGTGATTTCAAGGGATGGACTGAAACCAGATACTGATAAAGTTACTGCCATCAAGAATATGCCGAAGCCAACAACTAAGCCTGAAGTTCTTACCCTGCTTGGTTTTGAAAACTATCTATCTAAATTACTACCAAAGCTTTCAGATGTGTCAGCACCTTTAAGAGAGCTTACAACCAAACAATTCAACTTCACCTGGGCCAAACAGCACGATGAGGCTTTTGCCACTATTCAGCATTTGGTTACTCAACACCGGGTCCTTAAATTCTACAGTATAGAAGAAGAAGTAACTATTCAGACGGATGCCAAATCAGAAGCTTCCAATGCAAAGCTTCCTGACCGCCCCTGGAGTCAAGTAGCTGCTGACCAGTTCAAACTTCATGGCAAAGAATACATAGTGCTTGTTAACTACTACTCAGATTTCCTAGAAGTACAAAAATTGGAGGAAAACACTTCCAGTTCTGTGATTAAATTCTTTAAGGAACAATTCAGCCGACATGGCATTCCAGATACTCTAACTACTGACAACGCTTCTCAGTTTACAAGCCATGAGTTCCATCAGTTTTCAGTTGATTGGGAATTCACTCAGGTGTCGTCTTCCCCACATCATTCCAAATCCAACGGAAAGGCAGAGTCTGCTGTGAAAATTGTCAAGTCTTTGTTCAGAAAAGCTCTCAAAGACAACAAAGACCAGTGGTTAGCCCTATTGGACCAGTGCAACACACCAACAGAGTTCATGGAAAGTAGCCCTGCACAGAGATTGATGTCTAGACGCACTAGAACCTTACTACCTACAGCTTCTAACTTGGTGCTCCCTAAGATTCCCAAAAATGTGAATGCAAAGCTAAAATTGAAAAGGCAAAAGGCCAAGTGGTACAATGATCACACATCACGCTCCCTGCCAGAATTACATGTTGGGCAAGAGGCCAATGATGATGTTACTGTAGATGAAAAAGACAGCTTCTTTGTTGGTGATGCAGCAGGGCGACCAGCTGACTGGGAACCAGGAAAGAAGAAGGATTTCTCTTGCAATGATAGATTGTTTGCAGAAAATATTGGAATACAGTTCCACACTCCAGAAGAATTCTTCCTGGGGCACAAGCTATCACCATTTGAGTGGCCAAAATTTCTACCAAAAAATCTAGATGCTTATGGATCTTTATTAAATCCACCAAATGCAAAGTTGAAGTCAGAAGGTCAAGAGCTAATTGTTATGGTCGGATATCCAGCATCTGGGAAAACTACGTTTGTTAAAGATTATCTTCTACCACTGGGTTACGTCCAAATAAACAGGGATATCCTAGGTACATGGCAGAAGTGTGTTTCTGCTTGCAAGGATGCATTGTCATCTGGTAAGAGAGTAGTTGTGGACAACACAAGTCCAACAAGGGAAACAAGAAAGAGGTATGTTGACTGTGCAAAGCAGGCCAGGATTAGTGCTCGGTGTTTCTTATTTGACGTGAGCTTTGAACACGCTCAACATAACAATAAGATCCGCGAAATGACGAACAGGGACAGTTCATACAAACACGTAGGACACTTGGCTTTTGTGAAATACAAGTCTTCGTACGAAGAGCCACGTTGCGAAGAAGGCTTTGAAGAGATTGTTAAAGTAAACTTTGTACCAAAGTTTAAAGACGACCGGGTGAAAGAATTGTACATGCAGTTTCATAACTGA

Transcript

rna-Spis19849_mrna

ATGGAGTGCTTAGTAATCTGCTGCCATAAAAGCCATGATCCAATACTCCTTCCAGATGGAGAGACTGTGTTACTTGGCAGAGGCCCTCTGACCCAAATAACAGACAAGAAATGCTCCAGAAATCAAGTTCAGCTCacagcaaattatttaaaaaaggaagTGCTTGTGAAGCAGCTGGGAAACAATTCAAGTTCTGTTGGAGGAGTGAATCTGGGCAAAGGAGACTCAACATTTCTTGGTCCTGGAGGAACTTTCTGTCTCCTTGGAGACAAGTATTCTCACTTCATCTATTTCAGTAGACTACAACCTTCTGAAAGAGAAAGAGCCGATGATGAACCTAAATCCAAGAAAGCTTGTTTTGATACTTTAAGTGATTCAGATGATAATCTCACATCTGAAGACCTTGAGGATATACGCCGTGAATTTGGCCAACAGATGGTGGAAAAGATACAActgcaaaagaacaaaaaagttgaCCGTTCAAAAGAGGATCTAGCCTTTTGTAATTTGAGGGATTCATGGAAGGATATTGGAGAGGAGCTAATTGTTTTCACCAGTAGAGGGTCAGAAGCAAGTTCTAAGATTGCTGGTTTTGATTTGGATGGAACACTTATCACCACTCAGTCTGGGAGGGTGTTTCCCACCTCAGCCACAGATTGGCAAATTCTCTGTCCAGAAATTGTTCCAAAACTGAAAGGTCTTTGGCACAATGGATACAAGATTGTCATTTTTACAAACCAGCTTGGCATTTCCAGAAAGCAGTTAAAGGTAGCAGACTTTAAGTCTAAGATTGAGCAGATCATTAGTTACCTCAAAGTACCTGTGCAGgttTTAATTGCTACAGGAAATAGCATCTACCGGAAGCCGCTCACTGGTATGTGGAAGCACTTAGTCACACAGGATGCCACTTTGTCACCAGAAGAGAATGGAACATGTGTAACAACAGGGAAATTAAAAGCAATCAAAATCAATAACGAAAATCAGAACAAATTAATGCCAGCATATAATGGAACTATTCAATCTGAACCCTCAGAGTGGATCAGCAGTATGGTAATAGTTGGCAAACCTCAGAAGATTCGAATCTGTCTGGACCCAAAAGACCTGAACCGTGCCATACAACGCCCCAAATTTCGAATGCCAGTGTTGGAAGAGCTGTTACCAGACCTCAACAAAGCCAGAATCTTTAGCTCATTAGATGCCAAAGATGGATTCTATCAAGTTGGCCTTGACCAAGAGAGCAGTAAACTAACCACTTTCTGGACACCCCTAGGAAGATACCAGTACTTAAGAATGCCCTGTGGTATAAGTCTAGCGCCAGAAGCCTTTGAAAGCAGACTACAAGAATGTCTTGCCGACCTGCCTGGTGTGAAAGTCATCAGAGATGATATTCTTGTTGTTGGTTATGGTGTAAACGACTCGGAAGCCCTTCTTAATCGTGATCAGAATGTGGTCCACCTACTTGAACAAGCCAAACAAGTACATCTGAAACTCAACACGAACAAAGTTAAGCTTCGACAGGCAGAAGttaaattcatgggtcatgtgATTTCAAGGGATGGACTGAAACCAGATACTGATAAAGTTACTGCCATCAAGAATATGCCGAAGCCAACAACTAAGCCTGAAGTTCTTACCCTGCTTGGTTTTGAAAACTATCTATCTAAATTACTACCAAAGCTTTCAGATGTGTCAGCACCTTTAAGAGAGCTTACAACCAAACAATTCAACTTCACCTGGGCCAAACAGCACGATGAGGCTTTTGCCACTATTCAGCATTTGGTTACTCAACACCGGGTCCTTAAATTCTACAGTATAGAAGAAGAAGTAACTATTCAGACGGATGCCAAATCAGAAGCTTCCAATGCAAAGCTTCCTGACCGCCCCTGGAGTCAAGTAGCTGCTGACCAGTTCAAACTTCATGGCAAAGAATACATAGTGCTTGTTAACTACTACTCAGATTTCCTAGAAGTACAAAAATTGGAGGAAAACACTTCCAGTTCTGTGATTAAATTCTTTAAGGAACAATTCAGCCGACATGGCATTCCAGATACTCTAACTACTGACAACGCTTCTCAGTTTACAAGCCATGAGTTCCATCAGTTTTCAGTTGATTGGGAATTCACTCAGGTGTCGTCTTCCCCACATCATTCCAAATCCAACGGAAAGGCAGAGTCTGCTGTGAAAATTGTCAAGTCTTTGTTCAGAAAAGctctcaaagacaacaaagaccAGTGGTTAGCCCTATTGGACCAGTGCAACACACCAACAGAGTTCATGGAAAGTAGCCCTGCACAGAGATTGATGTCTAGACGCACTAGAACCTTACTACCTACAGCTTCTAACTTGGTGCTCCCTAAGATTCCCAAAAATGTGAATGCAAAGCTAAAATTGAAAAGGCAAAAGGCCAAGTGGTACAATGATCACACATCACGCTCCCTGCCAGAATTACATGTTGGGCAAGAGGCCAATGATGATGTTACTGTAGATGAAAAAGACAGCTTCTTTGTTGGTGATGCAGCAGGGCGACCAGCTGACTGGGAACCAGGAAAGAAGAAGGATTTCTCTTGCAATGATAGATTGTTTGCAGAAAATATTGGAATACAGTTCCACACTCCAGAAGAATTCTTCCTGGGGCACAAGCTATCACCATTTGAGTGGCCAAAATTTCTACCAAAAAATCTAGATGCTTATGGATCTTTATTAAATCCACCAAATGCAAAGTTGAAGTCAGAAGGTCAAGAGCTAATTGTTATGGTCGGATATCCAGCATCTGGGAAAACTACGTTTGTTAAAGATTATCTTCTACCACTGGGTTACGTCCAAATAAACAGGGATATCCTAGGTACATGGCAGAAGTGTGTTTCTGCTTGCAAGGATGCATTGTCATCTGGTAAGAGAGTAGTTGTGGACAACACAAGTCCAACAAGGGAAACAAGAAAGAGGTATGTTGACTGTGCAAAGCAGGCCAGGATTAGTGCTCGGTGTTTCTTATTTGACGTGAGCTTTGAACACGCTCAACATAACAATAAGATCCGCGAAATGACGAACAGGGACAGTTCATACAAACACGTAGGACACTTGGCTTTTGTGAAATACAAGTCTTCGTACGAAGAGCCACGTTGCGAAGAAGGCTTTGAAGAGATTGTTAAAGTAAACTTTGTACCAAAGTTTAAAGACGACCGGGTGAAAGAATTGTACATGCAGTTTCATAACTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08645 all species →	PNK3P	Polynucleotide kinase 3 phosphatase	Family	Interproscan
PF13671 all species →	AAA_33	AAA domain	Domain	Interproscan
PF17913 all species →	FHA_2	FHA domain	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR013954 all species →	Family	Polynucleotide kinase 3 phosphatase	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR006549 all species →	Domain	HAD-superfamily hydrolase,subfamily IIIA	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR041388 all species →	Domain	PNK, FHA domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR006551 all species →	Domain	Polynucleotide 3'-phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12083 all species →	BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0046403 all species →	Molecular Function	polynucleotide 3'-phosphatase activity	Interproscan
GO:0046404 all species →	Molecular Function	ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity	Interproscan
GO:0046939 all species →	Biological Process	obsolete nucleotide phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX15913.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.