Gene detail

Detailed information of PFX15935.1 in Stylophora pistillata

Genomic Location: Spis.scaffold593:92818...107140
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

SLC39A13

ATGTGTTTTTTGATAAAAGGGACGACTTGGACCCAGGAAATTGTCTGGCAAATAATCAACGATGGCAAGATCGATTATCGCCCATTACATGTGAGAATGCCATGGGTAGATGGAATGCCAGATATAAAACTCGAGAATCCTTATACAGTGACGTCTGCTGAGATGATAGAAAAAATGTTCGAGTGCTTCCCATCCCCTCGCGTGTTCAAATCACATCTACCATACGACCTGGTCCCCAAGGGATATGGCCAGGCTACAAAGCCACATGCACGTTATATTTACGTCATGCGTAACCCAAAGGATGTAGCTGTATCTCTTTATGAGTTTATGGTCAAAGTGTCAGGCCGAGAAGCTCTCACCTGGAATGAGTTATTTGAGCTATTTTACCAAGGGCAAGTTTATTGTGGCTCGTGGTTTGATCATGTCCTCGGTTGGTGGAAGCACAGGGATGATCCTGATATACTGATTCTAAAGTACGAGGATATGAGGAAGGACTTGCCAGGTGCTATTCAAAATATTGCAACTTTCATTGGGAAGGAGCTGCCCCGCGAGACCTTGGAGCTTGTTGTGAGCCAAACATCATTCAACGCCATGAAGAAAGAAGGAAATTCTAATTTTTCCTTTCACAAAGGGTTCAAAGGTCTTTGCGTTCGTAAAGGCCAAGTGGGGCTTATCATGACGTCCCATCCCCGACTAAGAGAAAAGGCCCTGGGAATGAGGGAGAAAGTGGCTCTTCCTACGCATTGCGGACCTACCTTATGTACTGTGGGCTCAGGTTTTAACCTCAAAAACACCCGTGGCAATCGTACTCAGCACTTTTCAGAAGTCCGGAAACAAGGCGTGCGGGGTGAGGTGCTCCCACAAATTGCTTGGATCATGGCGAAATTTTCACGGATATCCATTGTGTTCCTTCTATGGCTCTCAGTATTCGTTTCAGAGACTGCTATGGTGAAAATTCATCGAGCTGTGCCGCGAAATGGGAAGCAAACGCGCGCAGATTCAGACTTGAGTTGGCTTGGTTTTGAACCCTGTAAATTTCTGCCCGATTTGTCGAAGATTTTCATGAAGAAAGAAGCGTGGTTGTACTCGATTCCGGCCACAATTCTAGTGGGAATGTGCGGTATATTTCCGCTTCTTGTGATCCCTGTGGAAGCTGGACAAGCTTTGCGAGAAGGCGTCACTGCAGATCATCTGAAGTTGCTGTTGAGTTTTGCTGTTGGTGGCTTATTGGGAGATGTTTTTCTGCATCTGTTGCCAGAGGCTTGGGCTCATGTTCATGAAGGAGATCCACACACCAATCATTTCTACATTGGCTTTTGGGTGCTGGCTGGAATCTTTGGATTTTTAACATTAGAAAAAATATTTGGTGAAGAAAGTGAAGATGAAAAAAATCTCAAGAAGAAAGACAACAGCAAAGGAAAGGATGTCAAGAATGGTACCATTTCCAATGGATGTGTTAATCATGAAAACACGGCTAAGAGAAAAAATGTATGCAATGGAGAACTTCATAATGGGACAGTTTCTAATGGAGAAGTTAAAAAGTCAGATATACAGTTAAGGCAAAGACATGGAGAAACTGCTAGTCACTGTAGCGCATCTAAAGAAACAGTTCAAGTAGCAGATAATCGAGAAACACAAGACACAGAGGAAGAAAATGTCAAAGTTATTGGATATCTAAACTTGTTGGCAAACTCAATAGATAATTTTACACATGGCCTTGCTGTAGCTGGAAGTTTTGTTGTCAGTACAAAGGTTGGATTGTGTACAACCTGTGCAATTCTTTTACATGAAATACCACATGAAGTTGGTGACTTTGCTATCCTTTTAAAATCTGGATTTAGAAGATGGGATGCAGCAGTAGGACAAATGGTGACAGCATCAGCTGGACTTGCTGGTTGTGTTTTTGGGCTTATAGCAGATCATGCAGGTGATTCCACAGCCTGGGTTCTTCCCTTCACCTCTGGAGGCTTCATCTATATTGCCTTGGTAACCATTGTTCCAGATCTTCTACAGGAAACAAGACCAAAGGAGTCGATGAAACAGACTATTATGATGATTGCTGGCATCTCTTGTATGGGGCTTGTCTCACTGATTCACTAG

Transcript

rna-Spis19820_mrna

ATGTGTTTTTTGATAAAAGGGACGACTTGGACCCAGGAAATTGTCTGGCAAATAATCAACGATGGCAAGATCGATTATCGCCCATTACATGTGAGAATGCCATGGGTAGATGGAATGCCAGATATAAAACTCGAGAATCCTTATACAGTGACGTCTGCTGAGATGATAGAAAAAATGTTCGAGTGCTTCCCATCCCCTCGCGTGTTCAAATCACATCTACCATACGACCTGGTCCCCAAGGGATATGGCCAGGCTACAAAGCCACATGCACGTTATATTTACGTCATGCGTAACCCAAAGGATGTAGCTGTATCTCTTTATGAGTTTATGGTCAAAGTGTCAGGCCGAGAAGCTCTCACCTGGAATGAGTTATTTGAGCTATTTTACCAAGGGCAAGTTTATTGTGGCTCGTGGTTTGATCATGTCCTCGGTTGGTGGAAGCACAGGGATGATCCTGATATACTGATTCTAAAGTACGAGGATATGAGGAAgGACTTGCCAGGTGCTATTCAAAATATTGCAACTTTCATTGGGAAGGAGCTGCCCCGCGAGACCTTGGAGCTTGTTGTGAGCCAAACATCATTCAACGCCAtgaagaaagaaggaaattctaatttttcctttcacaaaGGGTTCAAAGGTCTTTGCGTTCGTAAAGGCCAAGTGGGGCTTATCATGACGTCCCATCCCCGACTAAgagaaaaggccctgggaatgagGGAGAAAGTGGCTCTTCctacgcattgcggacctacCTTATGTACTGTGGGCTCAGGTTTTAACCTCAAAAACACCCGTGGCAATCGTACTCAGCACTTTTCAGAAGTCCGGAAACAAGGCGTGCGGGGTGAGGTGCTCCCACAAATTGCTTGGATCATGGCGAAATTTTCACGGATATCCATTGTGTTCCTTCTATGGCTCTCAGTATTCGTTTCAGAGACTGCTATGGTGAAAATTCATCGAGCTGTGCCGCGAAATGGGAAGCAAACGCGCGCAGATTCAGACTTGAGTTGGCTTGGTTTTGAACCCTGTAAATTTCTGCCCGATTTGTCGAAGATTTTCATGAAGAAAGAAGCGTGGTTGTACTCGATTCCGGCCACAATTCTAGTGGGAATGTGCGGTATATTTCCGCTTCTTGTGATCCCTGTGGAAGCTGGACAAGCTTTGCGAGAAGGCGTCACTGCAGATCATCTGAAGTTGCTGTTGAGTTTTGCTGTTGGTGGCTTATTGGGAGATGTTTTTCTGCATCTGTTGCCAGAGGCTTGGGCTCATGTTCATGAAGGAGATCCACACACCAATCATTTCTACATTGGCTTTTGGGTGCTGGCTGGAATCTTTGGATTTTTAAcattagaaaaaatatttggtgaagaaagtgaagatgaaaaaaatctCAAGAAGAAAGACAACAGCAAAGGAAAGGATGTCAAGAATGGTACCATTTCCAATGGATGTGTTAATCATGAAAACACGGCTAAGAGAAAAAATGTATGCAATGGAGAACTTCATAATGGGACAGTTTCTAATGGAGAAGTTAAAAAGTCAGATATACAGTTAAGGCAAAGACATGGAGAAACTGCTAGTCACTGTAGCGCATCTAAAGAAACAGTTCAAGTAGCAGATAATCGAGAAACACAAGACACAGAGGAAGAAAATGTCAAAgTTATTGGATATCTAAACTTGTTGGCAAACTCAATAGATAATTTTACACATGGCCTTGCTGTAGCTGGAAGTTTTGTTGTCAGTACAAAGGTTGGATTGTGTACAACCTGTGCAATTCTTTTACATGAAATACCACATGAAGTTGGTGACTttgctatccttttaaaatcTGGATTTAGAAGATGGGATGCAGCAGTAGGACAAATGGTGACAGCATCAGCTGGACTTGCTGGTTGTGTTTTTGGGCTTATAGCAGATCATGCAGgTGATTCCACAGCCTGGGTTCTTCCCTTCACCTCTGGAGGCTTCATCTATATTGCCTTGGTAACCATTGTTCCAGATCTTCTACAGGAAACAAGACCAAAgGAGTCGATGAAACAGACTATTATGATGATTGCTGGCATCTCTTGTATGGGGCTTGTCTCACTGATTCACTAGACTACACTTCTAGCAactgtgggtttttttttttttt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00685 all species →	Sulfotransfer_1	Sulfotransferase domain	Domain	Interproscan
PF02535 all species →	Zip	ZIP Zinc transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000863 all species →	Domain	Sulfotransferase domain	Interproscan
IPR003689 all species →	Family	Zinc/iron permease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16950 all species →	ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan
GO:0005385 all species →	Molecular Function	zinc ion transmembrane transporter activity	Interproscan
GO:0006882 all species →	Biological Process	intracellular zinc ion homeostasis	Interproscan
GO:0071577 all species →	Biological Process	zinc ion transmembrane transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030001 all species →	Biological Process	metal ion transport	Interproscan
GO:0046873 all species →	Molecular Function	metal ion transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14719	SLC39A13, ZIP13; solute carrier family 39 (zinc transporter), member 13	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.