Gene detail

Detailed information of PFX15949.1 in Stylophora pistillata

Genomic Location: Spis.scaffold592:15307...51762
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FANCD2

ATGCAGGTAGAGGTTGATCGTGCTCTCTTCCAGAAAAAAGTCAGAAATGGACTTAAAACTCATGAAAGTTACCCAGAGGTCGTAGACAACTTTCTTGAAGGACTGCAGACAAGGTTGGACGATGCGGACAGGTTTCTCCTCAGCTTGCTTCCAGTTTCTTTGGCAGAGGACGTTGACGGACATGTAGGGGGCCAAGAAGGCTTGATCAGAATGCTATTGGGTATTGACATACTTCAGCCAAAGATTGCCAGTATGCTTCTGGAAAAGCTTCCAGAGTTTACAGAAGATGACTGCAACCCCAGACGGGAGCTGGCTGAGAAGATGCTGGAGATTGTAGGAATAACATCTGTGGAAATTCAGCGTGAAATTATCACATGCATTCCTGAAGTACTGGATGATGCAGAACACACTGAAGTAGCAAGGGAACTTAGCGAACTTCTATGTCAGAACACAGGACTTACAGTTCCAATCCTTGATGCCTTGTCTAACCTTAACTTACACTCTGATCTCTTAGCTGAGGTGCGAGCATCAGTGATACAGATATTACCATCTGCAGAAATCAGTGACTTGCCAGTTGTTGTCAAATTTATACTTCAATCTGTTAGTGACAATGATGCTTTTGAGGTGATCAGTGAATTACGAGCAAACCTGGACTTCACATCAACCACTCTGCAACCTTCAGCCTGCTCTACTCCTGCTGAGCAGCAACGACCTTCAAGGGGAGGGTCAACAAGTGATGGGGAGCTTTTTACACTTGAAGCAATCTGTTCAGGAATCCGCTTCCAGAAATCAGTTGCAGAAGGTTGGATCAAGGCCATTGAATCTGTTAATTCTCCTGTGAAACACAAGGTTGTGGACTTGTTTGTGCTGCTTATTCTCCACTCCACTGCAAATCGAAAGAAGGCCATGGAAAGCTTGATTAGGAACAAAATAAAAAATGGTCACTTTACTGAAGAAATGCTGAGTGCAGCATTCAGTTCACACTCACAGATTCTAAGGGAATATTTCCCTGACTTGTTGTCCTTGGCAGAAATTCTACTGAGGTCTCCTGACCCATCAGTCTGTTCCTATGCTTGTTCTACATACAAACTATCATTTGTTTCATTTGATCTTTACTGTCAGCAGGAGGTGGTAGGGACATTAGTGACCCACATAGGCAGTGGATTTGCAGCAGAAGCAGACGCCTCATTAGATGTGCTATCAGATCTTGTTGAATCTCATGCAGATATCATGGCACCTTTTGCTATTTTTATTAAAGGTCTTTTGGATTACTTGGATAATCTCACAATAACACAGATCAGAAAGCTGTTTAGTATGCTGAGCACCCTGGCTTTTGCCAACCAACAAGAAGGGGGACTTATACAGGATGACATGCATATTGTGATTAGAAAACAACTGTCAAGTAATTCTGCCAAATACAAGAGAATTGGTATCATAGGAGCCATTATGGTTGTACACAGCATGGCCAAGAAGAGATCTGTGAATGAGGGATCAGAAGAAACAATGGACTCTCAGTCACAACCAAGAACCACTCTCTCTAATGATGTTTACAAACAGATTTGTAGCATGTTAGAAATGATACGTAACAGCACCAATCAGACTCCAGAAGCCGCAGCATTGTTTTATGATGAGCTGGCAAGAATTATTCAACTTGGAGGCATTGATCCAAAAATTGAGCAGGCCTGGATAAGTGAAACAGTTGTGGCTGATTTTCAAGATGACTTTCTAGTGGACAGAGAGCAACCCACAGAAAGTGTTGGTGTTCCCATGGAGTTATCATATGCCCTGGATGAGGCAGAAGAAGGCAGCATAGCTGTCAATATCCTTCCATTACTCTTGGCATCCAGAAAGGGTGCAACAAGCAAGGAAAAACTTGACAGTGTACCAGCCTCTCTCATATGCCTTGCACCTCATTTCCGCCTTTTGCGGGTCTGTGAAGAAAGTCAACACAAGGGAGATCTTGAAGGAATTGATGCTCTTTTAGGGTGTCCACTTGTTAGTTTTAAAGAAGAAATGATCAAAGAGATATCCTCTTTAGACCAAGCAGATAGAGAAGTCATTTGTGGAACTTTGTTCCACACTGTGAACTGGTTCCGAGAGGTTGTGAATGCATTTGCATCCCAAGAAAGCCCTGAATTGAGAGGAAAAAGCATTGCAAGACTTCAAGGGATAACAACATTGTGTGCTGTTTTGGAAAAATGCCTTGCAGCCACACCTACCTTTAAGCCTCCACTGGCGACCTTTGACTTTGAAGACTCACTGGTGACAAGTCCTCATTCAAATGGGAACAAGTCCAAGGCTAAGAAAGGGAAGAAGACGAATAAAGGATCACACACTGAAAAACCAGATGATTCTATAGAAAAGATAAAAGATCCGGAAACAGAAAATGCCAATAACAAAGAAAGTGAGACACAAAAAGACAGCTGCAAAGATACAAAAGAAAAGGAGAAAGATAATGAAAAATCAACAACTATATCCATGTCACAGTATCAAGCATTTCTCAGGGAGTTGGATCTCAAGACATTTAGTATTTTGAAATGTGGTCTGGTCTCCCGTGAAGTTTTGGATTCTGAAATGAATACAGAGCAGGAGACAACAATATTGCAACTCCAGGCACCTCAGCTGGAGTTTCTGTTGGAGGATCTTTCCAGAAAGCTTCAGTATTCACTCTCAGCTTCTGCATCTTCAAGGAGGAACTTTCTCAAGGTCCGTCAGGATAAACTAGTGGGTTTTTCCAACTTGTCCAGACATCCTGCAAAAGAAGTGGCCAAGTATGTTGTAGAGCTGCTGCCAGTCTTGTGTGAGCATTTAGAGGCTACCAGTGCTTTCTTCCAGGCTTTAGTTGCCCAAAATGACGGCTTGATGGATGGTCCAGGCTATAACACTGATGAAGCACATGTGATGGCTTCATGTTATCACCTCCTTTTCAACTGTCTGCAGACTCTCTTTGCATGGAGTGGTTTTGTGACCAGTGAACATCAAAACCTTTTCAAAAAAGCTCTTTTTGTGCTTTCCTCAAGAATTAAGCTCTCCAGCAAGTCTCAGCCAGGATTTCAAGCACTTCTTGAACAAAGCTTCCACTACCTTGAGCAGTTCCAAAGGAGTATTCCAAACATTACAACAGCTGTTAGCCTTACCAAGTTATTAGTAGTTTTGTGTGAAAGGGGAAGAGATGTCAACAATGGCATGAGCATTTCTCTAGCTGAGTTAACTGGGAATTTCCTCAAGCGTGAGTGGCTTAGACCTGATGGTGAAAGGGAAAGTGGTGCGAAATATAATGAGGCCTTACAGTTCTTGCTAAGGTTTCATCTATCTTGTGCAGAGGACACCCTTGTCACAATAGAGGAGGTGGCAGGTGGGGCAGTGACAGAACTCATTGAAAGTGAGGACAAGAATGCAGCCTCCACCACATATCAAACTCTTACAAGATCATCTTTGCCTTGTTACTACCGTGCAATGATGGAAGAGTTGATTGGACACCTCAAACAAACTCATTCCGTGCCACTCAAAAAAACTGACTCTCCAGAGTCCCATAATGAGAGGCTGGTGAAACTGAATATTTCTGTGAGACTTTTCCACATTCTTATAAATCTAGTTAAGGCTTTTGATCAAAGATCTATGATTGGAGCATCTTTGAAGTTTGGACGTTTGTTTGTGGACACATTCCTTAAGTTGGGGATGCCAGTTCTGGATTCTATGTTGAGGACACATAAGGATGACATTAATGGAATGTTGAAAAACTTGCAACAGAGCACAAGATCTCTTCAACATATCTGTGGACACAGCAAGGTAACAAAAGATCTCTCCCTCACTAATCATGTCCCAGCAGTCAAAAAGTGTCTGGAGACGTTTGTCTTCAGAGTCAAGGCAATGCTTACACTAAACAAATGTCACGAGGCGTTCTGGGTTGGGACACTTAAGAACAGAGACATACATGGTCAAGAGATCATGTCGCAGCAGTCTGCCGCAGAAGAACCTGCAGAAGAGGAGGAGGAAAATGAAGAAATGGAGGATGATGATGATGATGACGATGATGCCGACAAAGACAATGGAGATGAAGATGCGAGTAATGATGGAGAATCTAAACATGAGGGTGGGGAGTCGTACAGTGAAAGTTTCTAA

Transcript

rna-Spis19808_mrna

atgcaggtagAGGTTGATCGTGCTCTCTTCCAGAAAAAAGTCAGAAATGGACTTAAAACTCATGAAAGTTACCCAGAGGTCGTAGACAACTTTCTTGAAGGACTGCAGACAAGGTTGGACGATGCGGACAGGTTTCTCCTCAGCTTGCTTCCAGTTTCTTTGGCAGAGGACGTTGACGGaCATGTAGGGGGCCAAGAAGGCTTGATCAGAATGCTATTGGGTATTGACATACTTCAGCCAAAGATTGCCAGTATGCTTCTGGAAAAGCTTCCAGAGTTTACAGAAGATGACTGCAAccccagacgGGAGCTGGCTGAGAAGATGCTGGAGATTGTAGGAATAACATCTGTGGAAATTCAGCGTGAAATTATCACATGCATTCCTGAAGTACTGGATGATGCAGAACACACTGAAGTAGCAAGGGAACTTAGCGAACTTCTATGTCAGAACACAGGACTTACAGTTCCAATCCTTGATGCCTTGTCTAACCTTAACTTACACTCTGATCTCTTAGCTGAGGTGCGAGCATCAGTGATACAGATATTACCATCTGCAGAAATCAGTGACTTGCCAGTTGTTGTCAAATTTATACTTCAATCTGTTAGTGACAATGATGCTTTTGAGGTGATCAGTGAATTACGAGCAAACCTGGACTTCACATCAACCACTCTGCAACCTTCAGCCTGCTCTACTCCTGCTGAGCAGCAACGACCTTCAAGGGGAGGGTCAACAAGTGATGGGGAGCTTTTTACACTTGAAGCAATCTGTTCAGGAATCCGCTTCCAGAAATCAGTTGCAGAAGGTTGGATCAAGGCCATTGAATCTGTTAATTCTCCTGTGAAACACAAGGTTGTGGACTTGTTTGTGCTGCTTATTCTCCACTCCACTGCAAATCGAAAGAAGGCCATGGAAAGCTTGATtaggaacaaaataaaaaatggtcACTTTACTGAAGAAATGCTGAGTGCAGCATTCAGTTCACACTCACAGattcTAAGGGAATATTTCCCTGACTTGTTGTCCTTGGCAGAAATTCTACTGAGGTCTCCTGACCCATCAGTCTGTTCCTATGCTTGTTCTACATACAAACtatcatttgtttcatttgatcTTTACTGTCAGCAGGAGGTGGTAGGGACATTAGTGACCCACATAGGCAGTGGATTTGCAGCAGAAGCAGACGCCTCATTAGATGTGCTATCAGATCTTGTTGAATCTCATGCAGATATCATGGCACCTTTTGCTATTTTTATTAAAGGTCTTTTGGATTACTTGGATAATCTCACAATAACACAGATCAGAAAGCTGTTTAGTATGCTGAGCACCCTGGCTTTTGCCAACCAACAAGAAGGGGGACTTATACAGgatGACATGCATATTGTGATTAGAAAACAACTGTCAAGTAATTCTGCCAAATACAAGAGAATTGGTATCATAGGAGCCATTATGGTTGTACACAGCATGGCCAAGAAGAGATCTGTGAATGAGGGATCAGAAGAAACAATGGACTCTCAGTCACAACCAAGAACCACTCTCTCtaatgatgtttacaaacagATTTGTAGCATGTTAGAAATGATACGTAACAGCACCAATCAGACTCCAGAAGCCGCAGCATTGTTTTATGATGAGCTGGCAAGAATTATTCAACTTGGAGGCATTGATCCAAAAATTGAGCAGGCCTGGATAAGTGAAACAGTTGTGGCTGATTTTCAAGATGACTTTCTAGTGGACAGAGAGCAACCCACAGAAAGTGTTGGTGTTCCCATGGAGTTATCATATGCCCTGGATGAGGCAGAAGAAGGCAGCATAGCTGTCAATATCCTTCCATTACTCTTGGCATCCAGAAAGGGTGCAACAAGCAAGGAAAAACTTGACAGTGTACCAGCCTCTCTCATATGCCTTGCACCTCATTTCCGCCTTTTGCGGGTCTGTGAAGAAAGTCAACACAAGGGAGATCTTGAAGGAATTGATGCTCTTTTAGgGTGTCCACTTGTTagttttaaagaagaaatgatcAAAGAGATATCCTCTTTAGACCAAGCAGATAGAGAAGTCATTTGTGGAACTTTGTTCCACACTGTGAACTGGTTCCGAGAGGTTGTGAATGCATTTGCATCCCAAGAAAGCCCTGAATTGAGAGGAAAAAGCATTGCAAGACTTCAAGGGATAACAACATTGTGtgctgttttggaaaaatgcCTTGCAGCCACACCTACCTTTAAGCCTCCACTGGCGACCTTTGACTTTGAAGACTCACTGGTGACAAGTCCTCATTCAAATGGGAACAAGTCCAAGGCTAAGAAAGGGAAGAAGACGAATAAAGGATCACACACTGAAAAACCAGATGATTCTATAGAAAAGATAAAAGATCCGGAAACAGAAAATGCCAATAACAAAGAAAGTGAGACACAAAAAGACAGCTGCAAAGAtacaaaagaaaaggagaaagataatgaaaaatcAACAACTATATCCATGTCACAGTATCAAGCATTTCTCAGgGAGTTGGATCTCAAGACATTTAGTATTTTGAAATGTGGTCTGGTCTCCCGTGAAGTTTTGGATTCTGAAATGAATACAGAGCAGGAGACAACAATATTGCAACTCCAGGCACCTCAGCTGGAGTTTCTGTTGGAGGATCTTTCCAGAAAGCTTCAGTATTCACTCTCAGCTTCTGCATCTTCAAGGAGGAACTTTCTCAAGGTCCGTCAGGATAAACTAGTGGGTTTTTCCAACTTGTCCAGACATCCTGCAAAAGAAGTGGCCAAGTATGTTGTAGAGCTGCTGCCAGTCTTGTGTGAGCATTTAGAGGCTACCAGTGCTTTCTTCCAGGCTTTAGTTGCCCAAAATGACGGCTTGATGGATGGTCCAGGCTATAACACTGATGAAGCACATGTGATGGCTTCATGTTATCACCTCCTTTTCAACTGTCTGCAGACTCTCTTTGCATGGAGTGGTTTTGTGACCAGTGAACATCAAAACCTTTTCAAAAAAGCTCTTTTTGTGCTTTCCTCAAGAATTAAGCTCTCCAGCAAGTCTCAGCCAGGATTTCAAGCACTTCTTGAACAAAGCTTCCACTACCTTGAGCAGTTCCAAAGGAGTATTCCAAACATTACAACAGCTGTTAGCCTTACCAAGTTATTAGTAGTTTTGTGTGAAAGGGGAAGAGATGTCAACAATGGCATGAGCATTTCTCTAGCTGAGTTAACTGGGAATTTCCTCAAGCGTGAGTGGCTTAGACCTGATGGTGAAAGGGAAAGTGGTGCGAAATATAATGAGGCCTTACAGTTCTTGCTAAGGTTTCATCTATCTTGTGCAGAGGACACCCTTGTCACAATAGAGGAGGTGGCAGGTGGGGCAGTGACAGAACTCATTGAAAGTGAGGACAAGAATGCAGCCTCCACCACATATCAAACTCTTACAAGATCATCTTTGCCTTGTTACTACCGTGCAATGATGGAAGAGTTGATTGGACACCTCAAACAAACTCATTCCGTGCCACTCAAAAAAACTGACTCTCCAGAGTCCCATAATGAGAGGCTGGTGAAACTGAATATTTCTGTGAGACTTTTCCACATTCTTATAAATCTAGTTAAGGCTTTTGATCAAAGATCTATGATTGGAGCATCTTTGAAGtTTGGACGTTTGTTTGTGGACACATTCCTTAAGTTGGGGATGCCAGTTCTGGATTCTATGTTGAGGACACATAAGGATGACATTAATGGAATGTTGAAAAACTTGCAACAGAGCACAAGATCTCTTCAACATATCTGTGGACACAGCAAGGTAACAAAAGATCTCTCCCTCACTAATCATGTCCCAGCAGTCAAAAAGTGTCTGGAGACGTTTGTCTTCAGAGTCAAGGCAATGCTTACACTAAACAAATGTCACGAGGCGTTCTGGGTTGGGACACTTAAGAACAGAGACATACATGGTCAAGAGATCATGTCGCAGCAGTCTGCCGCAGAAGAACCTGcagaagaggaggaggaaaatgaagaaatggaggatgatgatgatgatgacgatgatgccGACAAAGACAATGGAGATGAAGATGCGAGTAATGATGGAGAATCTAAACATGAGGGTGGGGAGTCGTACAGTGAAAGTTTCTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14631 all species →	FancD2	Fanconi anaemia protein FancD2 nuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029448 all species →	Family	Fanconi anaemia protein FANCD2	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32086 all species →	FANCONI ANEMIA GROUP D2 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0000793 all species →	Cellular Component	condensed chromosome	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007129 all species →	Biological Process	homologous chromosome pairing at meiosis	Interproscan
GO:0031573 all species →	Biological Process	mitotic intra-S DNA damage checkpoint signaling	Interproscan
GO:0036297 all species →	Biological Process	interstrand cross-link repair	Interproscan
GO:0070182 all species →	Molecular Function	DNA polymerase binding	Interproscan
GO:1990918 all species →	Biological Process	double-strand break repair involved in meiotic recombination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10891	FANCD2; fanconi anemia group D2 protein	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.