Gene detail

Detailed information of PFX15975.1 in Stylophora pistillata

Genomic Location: Spis.scaffold589:148207...156046
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis19788_mrna

ATGTTCTGCAAAGTCACACAGAAAAGCTGCGAAGAGCACCTGCGTCTCAATGATATCAACGGCATATGAAACAGcatttcaaacaaagaaaatagtttatcCGAGAAATTCACCATTTCGCAGTTGGCAAGTGTTCAAGTGAAAAAACGTGCGCGAGACCTGGATCGAATTAAGAAGAGGAGAGAGATCTGGGCTGCAACTAGGAATAATATGGCGGACAAGCAGAACTTAGATTTCGAAGAAATTCACTTCTTTCCAATTCCCTCGCAAACGAATATCTATGGTCTAGCAAAAATCGACggaaaggaagaagaaagaaagctaTTTCTGGCTTCCCTCAGTGGCAGTGTGGTTTGCTTGGAATACCCGCAGAATTCACTTGTGCCGACCTTCAGAGAGGTCCCCTTCACCTACATCCCAgattCAGCAGAAATCGTATCTATTGATGCGTTTAACAGACCTGAAACAAGAAAAGGACTAGTAGTGGGGATATCGTTAATTTTGTTAAAGAATTCTAGAAGTCACCAAAAACAGTTCCTCAACATCTATTCAGCTTTGGAAAGTAGGTCAGAGTTCTCACTGGGTAGTCTTGCAGagGGCTGTCAACATCTTGAATTGAACTTTGTCCCTTTCCAGCTGACACATGCTGATGTTTTTGTGAAGGAAAGAAAGCAAATTGTGTTTTTGCTTTGTGGAAGTGATGGAAAGGTGCACATGTTTTGTGAGGAAAGGACTCAGCAGAGGTTTGAGGAGCAACcagttcaaaacttttttcctgAGCTGCAAAATTTGCCAAGCAATGTTCTTTGGTTGGAGGTGGAAACTTTGGACAATTCTAAACGTGTAACAGTTGTTGGCTGTCAAAACGGGCATGTTAAAGTAGCAGTGACTGACCTTACGAGGGGAAGTATTGACCAGGTGTACACTTTGGATCGTGATGGACCCATTTCAAGTGTGAAATTGTTTACGCAAGACTCGAGCAAAATTATCGACGCTACTGATGGTAAAAAGATTGAAAGCGGTCAAACAATTGAAAGAAGGGAATACCATCTTTTGGTTTGCTGTGCGATTGAAGCAACTGTCGTTTACACAAATATAATTAGCCAAGGTTTCACAAACATGGTGACTCTACCAGAGTCGGATGAATTCGACTGTGTGACGTGCACATGTATCGCTGATGTCAACTGGGACGGGAAGAACGAGATAATCCTGGGAACATATGGACAGGAACTCCTCATCTTTAAGGGTGTCCGTTTGGACAATACGGGGAACAGTTCAAACAGCATTGATTTTCAGCTGATGTGGAAGAGAAGTTTTGCGAGCCCTCTGTTTGCCATTGAATATCTAGATCTAACTAATGACGGACTGAAGGAACTCGTAGTGGCGTCGCTTTCAGGGTTACATGTACTTCAGCATAACCTAGACAACGTAGCCTTGCACAATGCGGAACAGAATTCTATAGATCCTACGGACGCAGAAGTAGTGACCTGACCCGCATGTATGTCATAATGTGCGCCTATTTACAGGCTGTGTTTAGATGTTTTCATCAGCCTAGCATTTCATGCGCGCCATCGAAAGACAGCGTAGGAAAGAGTTGTAATAACTCGCCTATTATCAGCTAAAGCAAGATGGAATTTTCTCGGTGCCATCAAGAGGTCGGAAATGTGCTCTATTTGAGTATTCAACGGCGTTAGTTTTACCGAAATGTATGCAGATCCTCCCCGTGAGTCTTGGTTTGTTTCCTAAGGGCCGGTTTAAGCAATTGCTCAAACTTTTAGAGCTTAAAGTCTATGGTGGTGGTACGGAAGAGACCGAAGCAGgtaaaaagaagaataacaatGTAAAACAAGGGACATCACAACAACACTGTCAACAAATGAATgatgaaagatgaaaattttattcataCACTAAATTTACCGGGCTGAccagagaaaaacaattatgAGCTAAGAACGATTTAGTGGTTCGAACAGAATTGAAGCTGTTAGAGTGGAACTTTTGTCGTCTTTGGTAAAATAACTTGTGACGTTAtgagataaaggctgatagtttctaaa

Protein

Pfam domain

No Pfam domain signature was detected for PFX15975.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR028994 all species →	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR029982 all species →	Family	Kaptin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15435 all species →	KICSTOR COMPLEX PROTEIN KAPTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0030027 all species →	Cellular Component	lamellipodium	Interproscan
GO:0034198 all species →	Biological Process	cellular response to amino acid starvation	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0140007 all species →	Cellular Component	KICSTOR complex	Interproscan
GO:1904262 all species →	Biological Process	negative regulation of TORC1 signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23295	KPTN; KICSTOR complex protein kaptin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.