Gene detail

Detailed information of PFX16278.1 in Stylophora pistillata

Genomic Location: Spis.scaffold559:133109...157537
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Fam65a

ATGGGAAAAGAAAACAGTGCCAGTAGCAAATCCACGCCAAACAGAAATTCACAGTCACTTAGAATGGAGCGGCACCCATTTGAAAGTGCAGCTGCAAGGTCTCAATCCTTTAGCGCCTCAGCAATCTCTCGTGTCAAGCCTCTTACACCACTTCAAAGTCCAGCAGAATTGGAGAGGAAACATTCTCAGATTCGCCGCAAGTCTTCCGGAATTTTTGGGCCTAAGCCAGCTTTGAAGTGTCCAAGGATTTCCCAGACAACGAGTGTGTTTACTAAACTTCAGTCAGCCCTCAGTGAATATGCACGACACCTTGAGGAAGCTCTGAACAGTGTAGAACCCAAGAGAAAAAGAATTGTGGAGCAAAGAATTAAGTTAATAGAGTCAAGGATACAGCAGATTGATGAGATTTTTCAACTCTACCTTTATGAAGAGAAGATGAGAGAAGGTTCGCGTAATTTGCTGCATGCCCTGACATCCCAGGGATCCAAAGGAGGTCAGGACAAGTGCAGAGGCAGCATAAATGCTTGTACAGAGAAAATGTGTGCTATTGAAGAGGAACTTGAAACTAAACTTGGTGTTTTCAGATTTCATTTAAATGCTCTTCAAGCATTTGGAAGGCTATGCAGTGGTGATGTATATGATATACATATTAGACATGGGAGTAATTTTAAATGGAAGTCAAGATGTAAAGTAGAAAGAGAAGGACAAAAATGGATAGATAATGAGTTCACATTGAGACCATCAATTACAGATGAATTTTCTGTCAGGGTCATTGAAATGAAAAAAATCCAAGCAAATGTTCAAATTGGAAATATCCATTTGAGATCAAGAAATTACATAAAAGCCAGACCACAGATCATGTCTGTACCTCTTAACAGCACAGGCTCCATGAAACTCAAATTGACAGTGGAATGGAGACCTTTTTCTGGGAAAGAGGAGAATACATTACGTTCCAAGCGACACAGTCTGTTATCAGAAGTTATCTTTATTCAGCCTTCAGAGTGTACAACACCTTCAACAGATTTAACGTACAGCCCTACAAAACAAAAGGGCTTTAGTGAAGTGGAATACAATGTTGAAGGAAATGAAGAGAAGCCTTTATTTGTAGATGAGGAGGTAGTTGTTGAAGACTTGAAAGATTCACCCGAGTTGGTTGCTGCAAATCTACCTGAAGACGACTTGAATGGAATTGTTCCAGAAGAACCTCAGGAGTTCCGTCATGCAACATCCTTGGATAGTGCCTTGCAGCATCTTATTCCCACTTTGCAGACAAACAAAGATCAATTTCCTGAGCTTGATGGCGTGATCACGCTTCTTGATAAACTAGAAGAACTCGTCAAGAAATGTTCCTTATTAAGATCTTCCATGTCTCTTTCTGTGGAAAGTGCGCTAGAGAGCTTTGACTTCTTAGAGCAGGATGCAGCGGACGAGAGAGAAAGCACGCCCCGCAGTACCGGTAGTGGGGGAAGCGGATGTCAAGATACTGGTTATAATAGCACTGACGACTATAACAAAGACTGTGTGGGGGAGGGTTCGTCTGATGCTGGTTACATTGTGGACTTTATGACTTCTGGGAAAACTGCTGAAAATTACGGGGACACAAATCATGGCAACGGAGTAATAAATGGAATCGAAGACAGTGGATCACAAAGCGAACATCTTGAAGTTGAAGAAAACGCTGATAGGAACTCTTTGAATGACTCTCCAAGTTGTATTTCTGATATCTTTTCGTCGCCGTCTTCGTTTGGTCAGCCTGTGGAGAAATCGGCGGGTTTGGATGAAGCTGAGTTGGGTGGCGTTTCATCCAACGCCAGTTCCCCCAGGAAACGGTTTGAAGTAGCAACGGAACTGATGGAGGGGAGTCCTCAACACAGCAGCCTCAGGACTCGGTCATCACGGGCGACAAGTCCTAATCTGTCCTCCTCATATGGCCACGAAGCTACAGTTGGTAGCAAAGTTTTGGACAAGGTCCTCCTTTGTCACTTACAATTTTGTGAAGAAGTCTCTGTGCATCTTGGTTCATTTGGGCCCATGAAATACAAGGAAATGCAAGCTCTCTCTAAACTTCGACAACAGAAGGAAGTTCTGAACAGACTCTTCACGTTCATTTTATCATCCGACCCAGTCAGTGAAATGGCTCTGTCAACAAGCAACCCACGTTTGGCAACAAACCCCGCGTTGTCCTCTCTTTGGGAGAAAACGTGCCAAGGCTCGCTCTTGTTTACTACGGCGGGTCAGCTTGTGAGCGGGTTTGAAGACACCTACAAGAAACAAATAACTCAGAGTTACAACAGAGTGGTAGATTTAGTCTTTTCAGTTATCGTAGCACGTGTTATCCATCAAGATCCTGATTTGACTGATGTTCAGCCCGAAGAGGAAGAGCTTGTGAGCGTGTTTCAGTTTGAGCATTACTTCATGGACTTGTGGAGGCCTAACTTGTCCAAGTACATCGACGAGGTGGCTTATGAACTTGTGATCTGTAAGCGCCTGCGTTCCACTGAAAAGGATGCTGTTGTTGCACAGCTGAAGCAGTACACGGAGATACCACTGTCCAAAACCTGTTTTTGTCCTGTGCTCTGTCTCTTGCTGGACAACGATTTTTTAGTTGCCCAGGCCGCAGAGTCTTATTTGTCGCATTTGAAAAAGAATGCTGACCTGCGTAGAAAGGCTATTAGTTTAAGTATCGAGGCGCTTGAGGAATCTGAGGAGAAACTGCGGGAAGGAGCATGCGTGGCTCTTACAGTGCTTCAGGCCAGAGATGCTGTTCCCCAACTGTTGTATCTTAGCAGATGTGATGTACAATCTGTAAAATTTGCTGCACGGAAGGCTCTCTCATCCTTGGGAGAGGAAGGCGAAGATGCATTAAGACAATCTGCCATGTCTTCAAGTGAAATAGCTGGACTAACGTTCTAA

Transcript

rna-Spis19456_mrna

AAATAGTGAAGGTTTTAGCAAGGTGAGTGGGGTCGCATTTCCGGAGAGTCTTTACCGTTTGGCTCTGATGACGAGGAGGAAACTGTACCGATGAAAGAAGCTTCTTATAACTGGCCAAATGggaaaagaaaacagtgcCAGTAGCAAATCCACGCCAAACAGAAATTCACAGTCACTTAGAATGGAGCGGCACCCATTTGAAAGTGCAGCTGCAAGGTCTCAATCCTTTAGCGCCTCAGCAATCTCTCGTGTCAAGCCTCTTACACCACTTCAAAGTCCAGCAGAATTGGAGAGGAAACATTCTCAGATTCGCCGCAAGTCTTCCGGAATTTTTGGGCCTAAGCCAGCTTTGAAGTGTCCAAGGATTTCCCAGACAACGAGTGTGTTTACTAAACTTCAGTCAGCCCTCAGtGAATATGCACGACACCTTGAGGAAGCTCTGAACAGTGTAGAACCCAAGagaaaaagaaTTGTGGAGCAAAGAATTAAGTTAATAGAGTCAAGGATACAGCAGATTGATGAGATTTTTCAACTCTACCTTTATGAAGAGAAGATGAGAGAAGgttCGCGTAATTTGCTGCATGCCCTGACATCCCAGGGATCCAAAGGAGGTCAGGACAAGTGCAGAGGCAGCATAAATGCTTGTACAGAGAAAATGTGTGCTATTGAAGAGGAACTTGAAACTAAACTTGGTGTTTTCAGATTTCATTTAAATGCTCTTCAAGCATTTGGAAGGCTATGCAGTGGTGATGTATATGATaTACATATTAGACATGGGAGTAATTTTAAATGGAAGTCAAGATGTAAAGTAGAAAGAGAAGGAcaaaaatggatagataatGAGTTCACATTGAGACCATCAATTACAGATGAATTTTCTGTCAGGgtcattgaaatgaaaaaaatccaagCAAATGTTCAAATTGGAAATATCCATTTGAGATCAAGAAATTACATAAAAGCCAGACCACAGATCATGTCTGTACCTCTTAACAGCACAGGCTCCATGAAACTCAAATTGACAGTGGAATGGAGACCTTTTTCTGGGAAAGAGGAGAATACATTACGTTCCAAGCGACACAGTCTGTTATCAGAAGTTATCTTTATTCAGCCTTCAGAGTGTACAACACCTTCAACAGATTTAACGTACAGCCCTACAAAACAAAAGGGCTTTAGTGAAGTGGAATACAATGTTGAAGGAAATGAAGAGAAGCCTTTATTTGTAGATGAGGAGGTAGTTGTTGAAGACTTGAAAGATTCACCCGAGTTGGTTGCTGCAAATCTACCTGAAGACGACTTGAATGGAATTGTTCCAGAAGAACCTCAGGAGTTCCGTCATGCAACATCCTTGGATAGTGCCTTGCAGCATCTTATTCCCACTTTGCAGACAAACAAAGaTCAATTTCCTGAGCTTGATGGCGTGATCACGCTTCTTGATAAACTAGAAGAACTCGTCAAGAAATGTTCCTTATTAAGATCTTCCATGTCTCTTTCTGTGGAAAGTGCGCTAGAGAGCTTTGACTTCTTAGAGCAGGATGCAGCGGACGAGAGAGAAAGCACGCCCCGCAGTACCGGTAGTGGGGGAAGCGGATGTCAAGATACTGGTTATAATAGCACTGACGACTATAACAAAGACTGTGTGGGGGAGGGTTCGTCTGATGCTGGTTACATTGTGGACTTTATGACTTCTGGGAAAACTGCTGAAAATTACGGGGACACAAATCATGGCAACGGAGTAATAAATGGAATCGAAGACAGTGGATCACAAAGCGAACATCTTGAAGTTGAAGAAAACGCTGATAGGAACTCTTTGAATGACTCTCCAAGTTGTATTTCTGATATCTTTTCGTCGCCGTCTTCGTTTGGTCAGCCTGTGGAGAAATCGGCGGGTTTGGATGAAGCTGAGTTGGGTGGCGTTTCATCCAACGCCAGTTCCCCCAGGAAACGGTTTGAAGTAGCAACGGAACTGATGGAGGGGAGTCCTCAACACAGCAGCCTCAGGACTCGGTCATCACGGGCGACAAGTCCTAATCTGTCCTCCTCATATGGCCACGAAGCTACAGTTGGTAGCAAAGTTTTGGACAAGGTCCTCCTTTGTCACTTACAATTTTGTGAAGAAGTCTCTGTGCATCTTGGTTCATTTGGGCCCATGAAATACAAGGAAATGCAAGCTCTCTCTAAACTTCGACAACAGAAGGAAGTTCTGAACAGACTCTTCACGTTCATTTTATCATCCGACCCAGTCAGTGAAATGGCTCTGTCAACAAGCAACCCACGTTTGGCAACAAACCCCGCGTTGTCCTCTCTTTGGGAGAAAACGTGCCAAGGCTCGCTCTTGTTTACTACGGCGGGTCAGCTTGTGAGCGGGTTTGAAGACACctacaagaaacaaataactcAGAGTTACAACAGAGTGGTAGATTTAGTCTTTTCAGTTATCGTAGCACGTGTTATCCATCAAGATCCTGATTTGACTGATGTTCAGCCCGAAGAGGAAGAGCTTGTGAGCGTGTTTCAGTTTGAGCATTACTTCATGGACTTGTGGAGGCCTAACTTGTCCAAGTACATCGACGAGGTGGCTTATGAACTTGTGATCTGTAAGCGCCTGCGTTCCACTGAAAAGGATGCTGTTGTTGCACAGctGAAGCAGTACACGGAGATACCACTGTCCAAAACCTGTTTTTGTCCTGTGCTCTGTCTCTTGCTGGACAACGATTTTTTAGTTGCCCAGGCCGCAGAGTCTTATTTGTCGCATTTGAAAAAGAATGCTGACCTGCGTAGAAAGGCTATTAGTTTAAGTATCGAGGCGCTTGAGGAATCTGAGGAGAAACTGCGGGAAGGAGCATGCGTGGCTCTTACAGTGCTTCAGGCCAGAGATGCTGTTCCCCAACTGTTGTATCTTAGCAGATGTGATGTACAATCTGTAAAATTTGCTGCACGGAAGGCTCTCTCATCCTTGGGAGAGGAAGGCGAAGATGCATTAAGACAATCTGCCATGTCTTCAAGTGAAATAGCTGGACTAACGTTCTAAACCAGTTGTATTTACTCAGCCACGCACCCCGTGACAGAAGACATAGAAGGGTGTTTTTGTGTCTTCTTGGAAGCCGTGTTGTTATGATATGGAAATGTGGAAAGGAGTTAGAGTTCCTTTCTATTTCCTTCAGAGAAAGTAAGGTCGAAAGGAAAATTTGGCGCTTAATCGCAGCAAGCGTATTACAAAGTCAGTAAGTCTCCGTATCTTTGAGTGACGTAATGTAACCTCTCACGGAGTActccagggcccagttgttcaagatcgattagcgctaacccagggttaaattttaatccaggtttctatatttctctgttcaaaagccattttaagataattttcccaattcttctgagagcattcaatcatcaaattgtaaacaaatggaattaaagtgaattttattttaaagctttcagatctgcaattaaatttcccggtaaccctgggttatcttaacccgcctttgaacaacccggcccagattactttcttctttgatctCAAGTTAGTTTTGATGTTACTATAAGCAGTGTTCTATATTCTGATATATAATTGGCCGAAGTATTTCAGCTGAGAGATTTTGAGCATGAAAAATACAGTTCTATACTAGCGTGtcgcaaaaaaattttgcacgAGTGTTGTTTAACAGGTTGgctattttttctcttctgcgggaaaaaagaaattgcagtTTGAGATGACTGATACTAGTGCTgggaact

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15903 all species →	PL48	Filopodia upregulated, FAM65	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR031780 all species →	Domain	FAM65, N-terminal	Interproscan
IPR026136 all species →	Family	RIPOR family member 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15829 all species →	PROTEIN KINASE PKN/PRK1, EFFECTOR	Interproscan

Gene Ontology

No Gene Ontology signature was detected for PFX16278.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24818	RIPOR, FAM65; Rho family-interacting cell polarization regulator	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.