Gene detail

Detailed information of PFX16280.1 in Stylophora pistillata

Genomic Location: Spis.scaffold559:28682...42864
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LEPRE1

ATGGCCGCAAGGCTTCTTTTCTGGCTTTCTCTGTGCGGATTTACAGCATCAAATCCTCGTGCAGATTTCTTGGACAGGCTGAACATCACGGCACGAAAATCGACAGCGTACGATGAGCTGTTTGCAGACGGTCATCGCGCGTATCGCGATGAAAAGTGGAGTGAAGCCATCGAGCTCTTTGAGAAGGCAATCGCTGATTATAGAAACGAAAAACAAGTCAAGATTCATTGTAGATTGCGTTGCCGCGAGAGATTCCAAGCATCATCGTCTCATAATACAATCAGCGACTTCGAGCTGAATTATTATCGTTACACGATTTATTCTCAGAAGTGTAGTCAGCAGTGCCGAGAAAAATATCTCGGTAAGCGAACCAAAGTCTCAGTCACGGTTCGGGACAGCTTCGAGAAAAGGCTTCCATATGGCTATCTTCAATTTGCCTACTACAAGGCTGGCCGAGCAGTAGAAGCAGCTAGAGCAGCTTACACATGTACAGAAGCTCAACCACAAGACAAGGCCATGGCAGACAATATAAAAATCTACAAGAAAATGCCTGGTGTTACAGAATCTGGGATTTTCTCATTAGAACCCACACTTCATCAAGAGAGTTATTTCAATGCTGCTCGTTTGTATGAAGAAGAACAGTGGAGTGATGCGATCCAGGGATTTGAACAAGCTCTTGAAGAGTATTACACTGCTTATGACAACTGCAAAATAATGTGTGAAGAGGAACGTGAAAAGAACAAGATTTTAAGCAGAGCTGGCTTGTTTGGGGTTCATGTTGACATTTTGGAATGCCGCAATGGATGCCCTGATAAGCTGAGAGAAGTGAAGGGGATTTTTGTGAGGAACTATCTTGCAAGACACTACAACTATCTCCAGATGGCTTACTTTAAAGTGGGAAAGTTATGGGATGCTGCTGGCTGTGCCGCAAGTTATTTGCTGTTGGATCCAGATGACGATACAATGATTGACAACTTGAGATATTTCAAAGGGGAACTGGGAGATCAGAGCCTAAAAATAACAGCAAGAAAGATGGCAAAGGTGTACATGGATGAGGCTGATTTTGATGACAGCGACACCTGGTTTCATGATGGTGGGGATGATGAACCAAGAGAAGAGGAAGTGAAACTTGAGGATCTGGTAGAGGGGGAAGAAGCTTACACAGTTGAGAAGCTCTGGGGTCTGGGTCCAATCAAAAAAGAACCACCAGTGGAGAATCCAAATGATGTGGTTAATTTTGAAAGATATAAGGGATCAAAGATTCTTATGACTGAGGCTGACCTGAATGGCACATGGAGGGTCGCCGTGGATGGAATGGCAACTGAAGAGGAGTGTAAGATGTTGATTAAATTAGCTGAGAAGACAGCCACACTTGGTGATGGTTACGATCAACGAAACAAGGACGAGAAGCCATTTTCTTTCACTGAGAAAGAAACGTTTTCCGGCGTTACTATACTCTCTGCTTCAAAGGCAGCTCGTAGAAAGGAAGTACCTCTGGAGGAAGTAGAGCTTTACTTCAACCTGAGTGATAAAGTTCGGCAGTTTACTGAGGATTATTTTCAACTGGACACGCCTTTGTACTTTTCATATTCACATCTAGTCTGTCGCACCTCGCTAATGGACCCCAGAGATCCCGACCCAGGCTTCCATTTGAGCCACCCAATTCATTCGGACAACTGTTTACTGAACCTTGATGGACTGGGCTCTTGTCCCAAGCGATCGCCAGCTTATACGTGGAGAGATTTTAGTGCTCTGCTGTATCTGAATGGTGATTTCAAAGGAGGGGAGTTTTTGTTTGCTAACCCTGATGACTCTGTTCAGGCTAAACTTAAACCAGAATGCGGACGAGCCGTTGCTTTTTCAGCTGGACTGGAGAATCTTCACGGTGTGGCCGGCATTCGAGAGGGGCGCCGGTGTGCTCTGGCTCTGTGGTTTACTTTACGACAAAAACACGACGAACAACTTCGAAAAGTTGCCTGGGAAACTCTTCAGATGGCAAAGGAGGAAAAGCGATTGACAGAGTTGCCGTTGTTTAAGCCGGAAGTAGCCGCACATTCTGAACTCTAG

Transcript

rna-Spis19452_mrna

ATGGCCGCAAGGCTTCTTTTCTGGCTTTCTCTGTGCGGATTTACAGCATCAAATCCTCGTGCAGATTTCTTGGACAGGCTGAACATCACGGCACGAAAATCGACAGCGTACGATGAGCTGTTTGCAGACGGTCATCGCGCGTATCGCGATGAAAAGTGGAGTGAAGCCATCGAGCTCTTTGAGAAGGCAATCGCTGATTATAGAAACGAAAAACAAGTCAAGATTCATTGTAGATTGCGTTGCCGCGAGAGATTCCAAGCATCATCGTCTCATAATACAATCAGCGACTTCGAGCTGAATTATTATCGTTACACGATTTATTCTCAGAAGTGTAGTCAGCAGTGCCGAGAAAAATATCTCGGTAAGCGAACCAAAGTCTCAGTCACGGTTCGGGACAGCTTCGAGAAAAGGCTTCCATATGGCTATCTTCAATTTGCCTACTACAAGGCTGGCCGAGCAGTAGAAGCAGCTAGAGCAGCTTACACATGTACAGAAGCTCAACCACAAGACAAGGCCATGGCAGACAATATAAAAATCTACAAGAAAATGCCTGGTGTTACAGAATCTGGGATTTTCTCATTAGAACCCACACTTCATCAAGAGAGTTATTTCAATGCTGCTCGTTTGTATGAAGAAGAACAGTGGAGTGATGCGATCCAGGGATTTGAACAAGCTCTTGAAGAGTATTACACTGCTTATGACAACTGCAAAATAATGTGTGAAGAGGAACGTGAAAAGAACAAGATTTTAAGCAGAGCTGGCTTGTTTGGGGTTCATGTTGACATTTTGGAATGCCGCAATGGATGCCCTGATAAGCTGAGAGAAGTGAAGGGGATTTTTGTGAGGAACTATCTTGCAAGACACTACAACTATCTCCAGATGGCTTACTTTAAAGTGGGAAAGTTATGGGATGCTGCTGGCTGTGCCGCAAGTTATTTGCTGTTGGATCCAGATGACGATACAATGATTGACAACTTGAGATATTTCAAAGGGGAACTGGGAGATCAGAGCCTAAAAATAACAGCAAGAAAGATGGCAAAGGTGTACATGGATGAGGCTGATTTTGATGACAGCGACACCTGGTTTCATGATGGTGGGGATGATGAACCAAGAGAAGAGGAAGTGAAACTTGAGgATCTGGTAGAGGGGGAAGAAGCTTACACAGTTGAGAAGCTCTGGGGTCTGGGTCCAATCAAAAAAGAACCACCAGTGGAGAATCCAAATGATGTGGTTAATTTTGAAAGATATAAGGGATCAAAGATTCTTATGACTGAGGCTGACCTGAATGGCACATGGAGGGTCGCCGTGGATGGAATGGCAACTGAAGAGGAGTGTAAGATGTTGATTAAATTAGCTGAGAAGACAGCCACACTTGGTGATGGTTACGATCAACGAAACAAGGACGAGAAGCCATTTTCTTTCACTGAGAAAGAAACGTTTTCCGGCGTTACTATACTCTCTGCTTCAAAGGCAGCTCGTAGAAAGGAAGTACCTCTGGAGGAAGTAGAGCTTTACTTCAACCTGAGTGATAAAGTTCGGCAGTTTACTGAGGATTATTTTCAACTGGACACGCCTTTGTACTTTTCATATTCACATCTAGTCTGTCGCACCTCGCTAATGGACCCCAGAGATCCCGACCCAGGCTTCCATTTGAGCCACCCAATTCATTCGGACAACTGTTTACTGAACCTTGATGGACTGGGCTCTTGTCCCAAGCGATCGCCAGCTTATACGTGGAGAGATTTTAGtgcTCTGCTGTATCTGAATGGTGATTTCAAAGGAGGGGAGTTTTTGTTTGCTAACCCTGATGACTCTGTTCAGGCTAAACTTAAACCAGAATGCGGACGAGCCGTTGCTTTTTCAGCTGGACTGGAGAATCTTCACGGTGTGGCCGGCATTCGAGAGGGGCGCCGGTGTGCTCTGGCTCTGTGGTTTACTTTACGACAAAAACACGACGAACAACTTCGAAAAGTTGCCTGGGAAACTCTTCAGATGGCAAAGGAGGAAAAGCGATTGACAGAGTTGCCGTTGTTTAAGCCGGAAGTAGCCGCACATTCTGAACTCTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13640 all species →	2OG-FeII_Oxy_3	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR039575 all species →	Family	Prolyl 3-hydroxylase	Interproscan
IPR006620 all species →	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan
IPR044862 all species →	Domain	Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain	Interproscan
IPR005123 all species →	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14049 all species →	LEPRECAN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0032963 all species →	Biological Process	collagen metabolic process	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0031418 all species →	Molecular Function	L-ascorbic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX16280.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.