Gene detail

Detailed information of PFX16397.1 in Stylophora pistillata

Genomic Location: Spis.scaffold550:57596...67391
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis19331_mrna

TTGGAAGCAAAAGTTAAGTACTGGCACATGGAGCTATTTGAAAGTTATCATGAACGTCTTATGCGTTAAGACTAACTAAAGAATGAGAAAATCgtggaaagaaacaaaacccaAGGACAAATGTGAGGAGCGTGTTGGATCAGAAGATCACAGGCATGATTTCACCGGAGATGAAATCCAGCGAACTCGAGCCAAGCTGTTGACCTGGTACGACAAGAATCGCAGAAAGCTTCCCTGGAGAGATTTGGCGTCTCAGGCTGATCCAAACAGGCGTGCATATGCTGTGTGGGTCTCTGAAGTTATGCTGCAACAAACACAGGTCGCCACCGTAAAGGAGTATTACATTCGCTGGATGAAGAAATGGCCGACTGTTGAACATTTGTCGCGTGCGAGTTTGGAAGAAGTGAACGAGATGTGGTCGGGGCTTGGTTACTATTCGCGGGCAAAGAGACTCCACGATGGAGCTAAAAAGGTTGTAgaggaaatgaaaggaaacatACCATCGACAGCATCTGAACTACTGAAGCAGCTACCTGGTGTTGGTAGATACACTGCAGGTGCCATTGCTTCCATTTCGTTTGGTGAGTGCACTGGAATAGTTGATGGGAATGTGATACGAGTTTTATCAAGGCTTTGTGGTATTGGTGCTGTAAGTTCCAGTACTCAAGCTGAGCACAAATTTTGGGAGCTTGCTCATAAACTTGTTCCTGAAGACAGACCGGGAGAGTTTAATCAGGCTTTAATGGAATTTGGAGCCACATTATGTATGCCTCAGGCTCCTCAGTGTCATGTATGCCCTCTGCAAAAGGATTGTAGTGCTTTGAAGCAAGTAGTAAAACAAGATACTCCAGTATCTATTCTGCACAGAGGAAAAGGAGGAGAATCCAGCAATATTGTAAAAGGTGATAAACATGTTGACATTGAAGAATGTACCCTTTGCCTACCATCTTCACTGTGGAAGCCCTCCCTTGGTGTTTGTAATTACCCACAGAAACCTAAACGGAAACAACCAAAAGAGGAGACTTTGGCTGTTGTTGTACTTAAATGTAATTTAGAGGGGGGATCTCACTTTCTCTTAACTCAGAGACCTGAAACAGGACTTTTAGCAGGCCTTTGGGATTTCCCTAATGTTGCTGTAGAATCAAATAAATCCGATGCTTACATGTTTACTTCACTGTGCAATTTCTTGGAACACAAACTGGGTATCACTCTGGAACAGAGGACTCCACAAAGAATAGCAGACGTTTCTCATAAATTCTCACATGTTCATCACAAGTACATCGTGTTTGTATACGAGCACCCTGAAATCAAGAATTTGCCTCAAACCTCtcaagaaaaaagcaaaataaggtGGATAACAAGAGATGACCTAGATACTGCAGCTCTTTCTACAGCTATGAGGAAAATTTTCACTGCCTTTGAAAATCATAATAGTAATGAGTATGAAAAACAAGCCAAAGTGgacaggaaaagaaagaggGAAAATTCTTATGATGGGAGAAAACAGATGGTGCTGGACAGATTTTTCAAGTCAAAGGACCAACAAGAGTATGAAGTTGTTGGGTTGTGAGGCATTTTTACCTGTCAGGAGTGTATGTTTGCTCCAGACTCAGTTTACATTTGTGTAGTTCCTTCCATAGAAACACAGTAAATGTCGCACATACATCGTAGTGAAGGTGCGCGTAGGCTTATAATAAATGACTGTTGCTAAGGTAGCTTGAGGAGGCATGTATTTTTTAAGGGGCCCAGTTGGTTAGAAGATTTCACCATTCATAAAAGTTCTGAAGTTTAGAACCCCCCAATGAATACTCTCAACTCCTTATAACTTGAACCCACGCTAAGTCGTACCTTGTGCCAAAAAAAGGAGACAAACAAACAGGTTGGAGGGTGGTATAAACAGTTGGTTGGAGGTCAGAATTGCACTAGAGTGTGAAGGAACTCAAACGTGCTCTTGTTCTTTTCACAAAAGTGCCAAGAAAAACGTTGGGATGTTGAACttgcaagagttattttttggCATGGGTTGGTTAAGTCAGGACTGTGgctgattttcatttttgtaaaagaaaaaaataggcaCTGAGAGGTGCATATGCCTACTGCTTAAACTTAGAATAGAAATAGTGATATATGTGGTGTAGTGCTTAGTTAATGAGTTGTCATAGatatttcaagttatgaaaatatttgcaatgTGAGCCTCATTTGAATAACCCATGCTTGATGCCGGTCAATTCTAACATGGCATCTaaacttttaagaaaattttctatatttggttttgttttcatttacctCGAGACAAACAATTAAGCAAAAGATTTATTTTGCCTCAAAGTCATGCTAGAATCTTGATTCATCAAATTTGGGCTACCTTTAACCAATTGCTTGAGACTGTAGGGGATTTGAATAATTATTACTGTACATGCAGGTGTTTCTGATGTAATGATAACAAAAGCGCTGGGCACCAAATTTGTGTAAAACTGTCATTTAGTACAGTTGCTTTAATCACTCTAATGAACTGATACACTCTGATGAAAGTGATtacagggttcgtacaggtcatgga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00730 all species →	HhH-GPD	HhH-GPD superfamily base excision DNA repair protein	Domain	Interproscan
PF00633 all species →	HHH	Helix-hairpin-helix motif	Motif	Interproscan
PF14815 all species →	NUDIX_4	NUDIX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003265 all species →	Domain	HhH-GPD domain	Interproscan
IPR000445 all species →	Conserved_site	Helix-hairpin-helix motif	Interproscan
IPR015797 all species →	Homologous_superfamily	NUDIX hydrolase-like domain superfamily	Interproscan
IPR000086 all species →	Domain	NUDIX hydrolase domain	Interproscan
IPR004036 all species →	Conserved_site	Endonuclease III-like, conserved site-2	Interproscan
IPR029119 all species →	Domain	Adenine DNA glycosylase, C-terminal	Interproscan
IPR044298 all species →	Family	Adenine/Thymine-DNA glycosylase	Interproscan
IPR023170 all species →	Homologous_superfamily	Helix-hairpin-helix, base-excision DNA repair, C-terminal	Interproscan
IPR011257 all species →	Homologous_superfamily	DNA glycosylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42944 all species →	ADENINE DNA GLYCOSYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000701 all species →	Molecular Function	purine-specific mismatch base pair DNA N-glycosylase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0016798 all species →	Molecular Function	hydrolase activity, acting on glycosyl bonds	Interproscan
GO:0032357 all species →	Molecular Function	oxidized purine DNA binding	Interproscan
GO:0034039 all species →	Molecular Function	8-oxo-7,8-dihydroguanine DNA N-glycosylase activity	Interproscan
GO:0035485 all species →	Molecular Function	adenine/guanine mispair binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03575	mutY; A/G-specific adenine glycosylase	EC:3.2.2.31	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.