Gene detail

Detailed information of PFX16459.1 in Stylophora pistillata

Genomic Location: Spis.scaffold545:104904...116386
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis19271_mrna

atgTTTAGTCTGGCGGCTAATTTTCGCCGATTGCTTTGCGTGGGTGACAGGGATGGGCGCTGGGTTGGGCGTAATTTCGAGACTCTCAAGAAATCTTTTAAAATTCCGCGGGAAAGAGCTTACGCTGTCATGACAACAAAGTATCTGAGCCAGCGATGCAAATTGCCAGGCAAGCTATCAAAGATGGCGTCCACTGGGATCCAGATGCAGATGGACCCGCTGTTTTTAGCGATGAGTTTTTACCGTCGAAGGAAATTCGAAGAATGCTCAGAAGTATGTACAGAGTTGCTGAAGAAAAATCCTTATGACCAGGCTTCCTGGTGTTTAAAGACACGAGCGCTCACGGAGCAAGTCTACGTGGACGAAGTAGATGTTGACGAGGAAGGAATCGCGGAAATGTTGATGGATGATAACGCTGTTGCCCAGTTACCTCGACCTGGAACTTCACTGAAAAAACCGGGAACAAGCACTGGGCATGGAGCCCCTACTCCTGGAGTTAGACCCATGTCCCAATCAGGACGTCCAGTTAGTGGATTTGTTAGACCTGGAACACAAAGTGGAAGACCTGGAACCATGGAACAAGCCATTAGAACTCCTCGTACTGCTCAAACAGCAAGACCAGTGACAAGTGCATCTGGTCGTCATGTTCGTCTTGGTACTgcttcCATGCTGTCACAACCTGATGGACCATTTATTAACATTGCAAAGCTCAACTTGTCTAAATATGCACAGAGGCAAAATCTTGCAAAGgttttgttTGAATATATTTTCCACCATGAAAATGATGTGCGAAATGCATTAGAGCTTGCGGCCAAAGCAACCGAAGAGTGTCAGTTTAAAGACTGGTGGTGGAAAGTTCAACTTGCTAAAAGCTATTACAGACTCGGTATGTATCGTGATGCTGAGAGGCAGCTTAAATCTGCGCTACGTGATCAAGACATAGTGGACACCTACCTGTATCTGTGTAAAGTGTACAAGAGGCTCGACCAACCAGTCACTGCTATTGAAGTGTATAAAAAGGCCTTGGAGAAATTTCCCGGAGAGACTACTCTTCTGACAGGAATAGCTCGCATTCACGAGGAGTTAAATGACATGACAAACGCCGTCAAGCTGTATAAAGAAGTTCTTCATTATGACAATACACACGTGGAGGCTATCGCTTGTATTGCAACGCATCATTTTTACACCGATCAGCCAGAAATAGCGCTCAGATTTTATCGCCGCCTTCTCCAGATGGGTGTATACAACGCAGAACTGTTTACAAATCTTGGCCTGTGCTGTTTTTTCGCTCAACAGTACGACATGACATTGAACTGTTTCGAAAGGGCGTTGGCCTTGGCTTCGGATGAAAACATGGCGGATGTCTGGTATAATATTGGTCACGTAGCTGTGGGTAGTGGTGACATTCAGCTTGCCTACCAATGTTTCAGGCTTGCTCTGGCTTCGAATAACGATCACGCCGAAGCCTACAATAACCTGGGGGTACTCGAAATGCGGAAAGGTCGTACAGAACAGGCCCGCGCGTTCCTTCAAGCTGCGGCGTCTCTTGCTCCTCATATGTATGAGCCTCATTACAATCATGGACTGCTGTCACTTAAGATTGGAGACTTACAGAGCAGTCACAGCTCCATAACTAATTCCTTAGAAGGCTACCCGGATCACAGCGATAGTAAAGATGTCCTCAATCAACTCAAGGAGGATTTCGCCGCGTTGTGAAAAATGGACGACTTTTGCAAATAATGACTATAATATTGTACATAAAAGAAACGGCTGAACGTATGAACTTTTAAATATCATTGTCGTTTTTGTCTGACTGAATATCAAGCACAGTCTCCATCGATTCTTCCAAGAAAATGCCTTCCTCTTCTCGGACTGTTTTGAAGATTAACTCGCAATTTAGTCGCAGGGTTACCACAAATGTGGTGCATTGAAAACGGTGATGAATCATGGTTTATTTATTTGGATCAcacattaaataattaaaaatatataaggTTCCTCAAATAATGTTTTAGTGTCAGTTTATTTAGCAAAATACAAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR028796 all species →	Family	Tetratricopeptide repeat protein 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44177 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0034464 all species →	Cellular Component	BBSome	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0097730 all species →	Cellular Component	non-motile cilium	Interproscan
GO:1905515 all species →	Biological Process	non-motile cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16781	TTC8, BBS8; tetratricopeptide repeat protein 8	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.