Gene detail

Detailed information of PFX16484.1 in Stylophora pistillata

Genomic Location: Spis.scaffold543:110964...143190
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

NPC1

ATGATCCAACTTACAAGCCGATGTCCCGCCTGCTGGAACAACATGAGAAGACTGTACTGTCAGCTGACCTGCAGTCAGGATCAATCGCTTTTTATGGATCCAACTCAGGTGCTCCCATTCCCACCATCACCTTCTATCAAACAATTTGTCTTAGCAGTTGATTATTTTGTTTCACCTCAATTCAAACAAGGCCTGTTTGACTCCTGCAAAGACGTCACTTTTCCCGGCAACAATGAGAAGGTTTTGAGTCTTATGTGTGGCACTACCGCAGAGCGGTGCACTCCAGATAAACTTCTCGCATACATGGGAAACACAGGGAATGGATTTGCACCATTCACCATCGATTTTCCTGACACACTGATTCCAAATCTTTCATGGATGAACCAAACTGTTTTTAAGTGTAACAAGCCATTTATAGATCCTCAAACAAACAAGACAGCACCCATTTGCAGTTGCCAGGACTGTTGTGCATGTTGTCCAGTACAAAAAATACGACTGAGTATCCAATCCACTCATCCTTCACCTGCTGGGTACCATCGATACCCAGATGAAAAGTGGATTCCGTTTGGACCAATCTTCCACTTGGAGCTGCTCAATCAGGTAAATGGTGACATAGTAAAGAATCACACTAAGGGTTATTGTGTATGGTACGATCAATGTACAACTGGAGCCAAGGCGAAGAACTGTCTTTACAATGGACCGGCCAAGAATTTGACCAATCCCGAGGGTGTGCAGATATTGAACAGTTTATGCCCAGAATTGAAGGGCCAACCTACTTGTTGTTCAACTAAACAACTGCAAGCGTTGGATAAGAGTTTGCAAACAATGATACAACTTACAAGCCGATGTCCCGCCTGTTGGAACAACATGAGAAGGCTGTACTGTCAGCTGACCTGCAGTCAGGATCAATCGCTTTTTATGGATCCAACTCAGGTGTTGCCATCCAAACCACATTCTATCGTCTTAGCAGTTGATTATTTTGTTTCACCTCAATTCAAACAAGGCCTGTTTGACTCCTGCAAAGACGTCACTTTTCCCGGAAACAATGAGAAGGTTTTGAGTCTTATGTGTGGCACTACCGCCGAGCGGTGCACTCCAGATAAACTTCTCGCATACATGGGAAACACAGGGAATGGATTTGCACCATTCACCATAGATTTTCCTGAAAAACTGATTGCAAACGTTTCATGGATGAACCAAACTGTTTTTAAGTGTAATCAGCCATTTGTGGACCCTCAAACAAACAGGACAGCAAGCCTTTGTAGCTGCCAAGATTGTCAGCCCTCTTGCCCTGTGCACCCCACCATACCACCGAAAGTACCCCCTACCAAGATTCTTGGATTGGATCTTCTCTCCTTTAGCCTTCTCATGGTCTATTGTTTCTTGGTGATATGCCTAATAGTTAGCTTGGTATTCAAGTGTATGAGAAGAAATGATTATGCCACTGTGCCTGACCATCCTCAACAGTACAACGGTGCTTACCCTCCAATATTAGGCTCCTTACCACAAACAGGGGATTCTCGACCTAGTTGTTGTGAGCAGCTGGGTAGCAAATTAGAGTCATTTTTGATGCGGTGGTTCACAAAATGGGGTGTATGGTGTAGCTCCCACCCATTTTCTGTCATGGTGGGATGTCTTCTCGTCGTTGGAAGTCTTGCTAGTGGACTTGTCTGTTTCTCTGTCACTACCGACCCTGTAGAATTGTGGTCTGCTCCAGACAGTACAGCACGTGAAGAGAAAGACCTTTTTGATTCCAAGTTTAAGCCTTTCTATCGCACGGAGCAGCTTATGATCCACTCGGCAGATTTAGTCACCACTGGCTATCATCGCTATGGAGATGAAAAGTGGATTCCCTTTGGACCAATCTTTCACCTAGATTTGTTAAATCAGGCTTTAGAGCTTCAGAATGAAATCACCAACATGAAAGTTCCCTATGAAGACTCAAACATCACGCTGCAAGATATCTGCTTTCAGCCTTTGGCCCCTCAGATCCAAGTTTGTACCATTCAAAGTGTCTTTCAATATTTTCAAAACAACCTAACCAAGCTGAACAAGTGCATAACCAGTATGGGTCATAACTGCGATACTCCCAATAATACGGACTTCTTTAAAGCTGATTTCCATGATCATATACTAGTTTGTACAAGAGCACCAACCTCTGAAGATGGCAAGTTGAACGAACCATGCCTGGGTGCATATGGCGGACCTGTAAATCCCAACATTGCGTTAGGAGGCTTCCATGATGGTGCGTACGAAAATGCTACAGCCTTGATCATAACCTTTGTTGTCAACAACTACAAGGACAAGAGCAAGCTATCCAAAGCAATGGCATGGGAAAAGCATTTCTTAGAGTTCATGCACAATTACACACAAAATAGCTCTAATAAAAACCTTACTATAAGTTACTCTGCTGAGCGTGCCATTCAAGATGAGCTAGACCTTAGCTTGGTATTCAAGTGTATGAGAAGAAATGATTATGCCACTGTGCCTGACCATCCTCAACAGTACAACGGCACTTACCCTACAATATTAGGCTCCTTACCACAAACAGGGGATTCTCGACCTAGTTGTTGTGAGCAGCTGGGTAGCAAATTAGAGTCATTTTTGATGCGGTGGTTCACAAAATGGGGTGTATGGTGTAGCTCCCACCCATTCTCTGTCATGGTGGGATGTCTTCTTGTCGTTGGAAGTCTTGCTAGTGGACTTGTTCGTTTCTCTGTCACTACCGATCCTGTAGAATTGTGGTCTGCTCCAGACAGTACAGCGCGTAAAGAGAAAGACCTTTTTGATTCCAAGTTTAAGCCTTTCTATCGCACTGAGCAGCTTATTATCCACTCGTCCTATCCAGTCCCCACTGGCTATCATCGCTATGGAGATGAAAAATGGATTCCCTTTGGACCAATCTTTCACCTAGATTTGTTAAATCAGGCATTAGACCTTCAGAATGAAATCACCAACATGAAAGTTCCCTATGAAGACACAAACATCACGTTGCAAGATATCTGCTTTCAGCCGTTGGCCCCTCAAATCCAAGTTTGTACCATTCAAAGTGTCTTTCAATACTTTCAAAACAGCAAAACCAAGCTGAACAAGTGCTTAACCAGTATGGGTTATAACTGTAGTACACCAAATGTTTCAGACTTCAGGGCAGCTGATTTCCATGATCATATAATAATTTGTACAAGTTACTCTGCTGAGCGTGCCATTCAAGATGAGCTAGACCGTGAGAGTGACACAGATATTTTTACCATTCTGGCCAGCTACTTGATCATGTTTGCATACATCACCATAGCTCTAGGACAGTTCAAGAGTTGTGACAGAATTTTGGAGGCAAAGCCACACATGTTGTCAACAAGAATTGACTCCAAATTTACCCTTGGATTCAGTGGTATCTTGGTAGTGTTATTCTCAGTTCTTTCTTCAATTGGCTTTTGGAGTTTTGTTGGTGAGCCTGCAACCCTCATTATCATTGAAGTGGTGCCGTTCCTTGTGTTAGCAGTCGGTGTGGACAACATCTTCATTCTTGTACAGGCATATCAGCGCCAGGAGCAGCATGCAGAAGGAGATGTGCCTCATAAAATTGGGCGTGTTTTGGGTGAAGTTGCGCCAAGTATGCTTTTGACCTCATTATCAGAGTCTGTTGCATTTGCAATAGGCGCAATGTCAACTATGCCAGCAGTAAGGATATTCTCCCTGTACGCAGCAGCAGCCGTGTTCTTTGACTTCTTGCTCCAAGTTACAGCATTTGTGGCCCTGATGTCTCTAGATGCCAAACGCCAAGAAAACAACCGCTTGGATGTTTTGTGCTGCCTCAAGCTACCAAAAGATGGCAGTGAATCAGACCATATGATTTGTGTCTATACTTTCATGAAGAACTATTTTGCAGAAGGTTTACTTTCAGACTACTCAAGACCTACTGTGATTGTCCTCTTCACTGGCCTTCTGTTTTCAAGCATTGCTACTATCCCTCACATACACATTGGCCTTGATCAAGAACTAGCACTGCCTAAGGATTCTTACCTTCTGAACTGGTTCAGGGACATGAAACAATATCTACATGTTGGTCCACCTGTGTATTTTGTGGTGAATGGAGGCTATGATTATGAACACCCTTTAGGACAAAACAAGATATGTGGCTCAGCAGGCTGCGAGTCCTTTTCTTTAGTGCAACAAATCTACAGTGCTTCACTGATACCTGAGGAATCCAAGATAGCTATGTCGGCATCTTCTTGGTTAGATGACTATTTTAGGTGGCTTGAACCTAGCAGGGAGAACTCATGTTGTCGTATAAAGTACAAAGTTAATGAGACGTGTTTCCATACAACATTAATGCCACATAACTCAACTAATACAACAACTCCAGCACCTGCTGTCATCTGCTACAATGAAACTACACCTGTGGTACCGTTTGTCTTCTGTAATGCAACAGTTGATGATGATTTGTGCAAACCGTGCCTGAATTTAAGCCAGCAAGCCTCTTACTTTATGTCCTATCACACAATCCTGAAAACGTCACCAGAATACACAGCAGCTTTGAAGAGCGCACGTGAAATCGGGAAGAACATCTCAAAGACACTTGGTGTGGAAGTGTTCCCATACAGCGTATTCTACGTTTTCTACGAACAATACCTTACGGTTGTAAAGGAAACTTGGGAAAATCTTTTGTATTGTGCAGCTGCCATCTTTGTTGTGACCTTCCTTCTCTTAGGATTTAATCTGGGTATAGCGATCATAGTGACCTTTACGGTGGCTCTCATCATTGTAAATTTGATGGGTCTGATGTACATTTGGAACATTTCACTAAACGCCGTCTCACTTGTAAACCTTGTTATGGCGGTTGGTATATCAGTAGAGTTTTGCTCGCATATTGCGCGAGCGTTCACCGTCAATTCTCAGCCCTCAAGGGTAGAAAGAGCTAAGGAAGCTGTAGCAAAAATGGGCAGCTCAGTTTTGAGTGGAATTACATTAACAAAGTTTTCTGGGATCTTAGTACTTTACTTCTCCAAGTCTCAAATATTTCAGGTTTTCTACTTCCGTATGTATGTTGGCATTGTAATACTGGGTGCTCTGCACGGGCTGTTCTTCCTTCCTGTTTTGTTAAGTTACGTTGGCCCAGCTCCCAGAAAAGTTCCTCCCACAACGACTTCGTCGGATCACACCTCGGCCGTTTCCGAGCGCACGCCGCTAATTAAGGCGTAA

Transcript

rna-Spis19245_mrna

ATGATCCAACTTACAAGCCGATGTCCCGCCTGCTGGAACAACATGAGAAGACTGTACTGTCAGCTGACCTGCAGTCAGGATCAATCGCTTTTTATGGATCCAACTCAGGTGCTCCCATTCCCACCATCACCTTCTATCAAACAATTTGTCTTAGcagttgattattttgtttcaccTCAATTCAAACAAGGCCTGTTTGACTCCTGCAAAGACGTCACTTTTCCCGGCAACAATGAGAAGGTTTTGAGTCTTATGTGTGGCACTACCGCAGAGCGGTGCACTCCAGATAAACTTCTCGCATACATGGGAAACACAGGGAATGGATTTGCACCATTCACCATCGATTTTCCTGACACACTGATTCCAAATCTTTCATGGATGAACCAAACTGTTTTTAAGTGTAACAAGCCATTTATAGATCCTCAAACAAACAAGACAGCACCCATTTGCAGTTGCCAGGACTGTTGTGCATGTTGTCCAGTACAAAAAATACGACTGAGTATCCAATCCACTCATCCTTCACCTGCTGGGTACCATCGATACCCAGATGAAAAGTGGATTCCGTTTGGACCAATCTTCCACTTGGAGCTGCTCAATCAGgTAAATGGTGACATAGTAAAGAATCACACTAAGGGTTATTGTGTATGGTACGATCAATGTACAACTGGAGCCAAGGCGAAGAACTGTCTTTACAATGGACCGGCCAAGAATTTGACCAATCCCGAGGGTGTGCAGATATTGAACAGTTTATGCCCAGAATTGAAGGGCCAACCTACTTGTTGTTCAACTAAACAACTGCAAGCGTTGGATAAGAGTTTGCAAACAATGATACAACTTACAAGCCGATGTCCCGCCTGTTGGAACAACATGAGAAGGCTGTACTGTCAGCTGACCTGCAGTCAGGATCAATCGCTTTTTATGGATCCAACTCAGGTGTTGCCATCCAAACCACATTCTATCGTCTTAGcagttgattattttgtttcaccTCAATTCAAACAAGGCCTGTTTGACTCCTGCAAAGACGTCACTTTTCCCGGAAACAATGAGAAGGTTTTGAGTCTTATGTGTGGCACTACCGCCGAGCGGTGCACTCCAGATAAACTTCTCGCATACATGGGAAACACAGGGAATGGATTTGCACCATTCACCATAGATTTTCCTGAAAAACTGATTGCAAACGTTTCATGGATGAACCAAACTGTTTTTAAGTGTAATCAGCCATTTGTGGACCCTCAAACAAACAGGACAGCAAGCCTTTGTAGCTGCCAAGATTGTCAGCCCTCTTGCCCTGTGCACCCCACCATACCACCGAAAGTACCCCCTACCAAGATTCTTGGATTGGATCTTCTCTCCTTTAGCCTTCTCATGGTCTATTGTTTCTTGGTGATATGCCTAATAGTTAGCTTGGTATTCAAGTGTATGAGAAGAAATGATTATGCCACTGTGCCTGACCATCCTCAACAGTACAACGGTGCTTACCCTCCAATATTAGGCTCCTTACCACAAACAGGGGATTCTCGACCTAGTTGTTGTGAGCAGCTGGGTAGCAAATTAGAGTCATTTTTGATGCGGTGGTTCACAAAATGGGGTGTATGGTGTAGCTCCCACCCATTTTCTGTCATGGTGGGATGTCTTCTCGTCGTTGGAAGTCTTGCTAGTGGACTTGTCTGTTTCTCTGTCACTACCGACCCTGTAGAATTGTGGTCTGCTCCAGACAGTACAGCACGTGAAGAGAAAGACCTTTTTGATTCCAAGTTTAAGCCTTTCTATCGCACGGAGCAGCTTATGATCCACTCGGCAGATTTAGTCACCACTGGCTATCATCGCTATGGAGATGAAAAGTGGATTCCCTTTGGACCAATCTTTCACCTAGATTTGTTAAATCAGGCTTTAGAGCTTCAGAATGAAATCACCAACATGAAAGTTCCCTATGAAGACTCAAACATCACGCTGCAAGATATCTGCTTTCAGCCTTTGGCCCCTCAGATCCAAGTTTGTACCATTCAAAGTgtctttcaatattttcaaaacaacctAACCAAGCTGAACAAGTGCATAACCAGTATGGGTCATAACTGCGATACTCCCAATAATACGGACTTCTTTAAAGCTGATTTCCATGATCATATACTAGTTTGTACAAGAGCACCAACCTCTGAAGATGGCAAGTTGAACGAACCATGCCTGGGTGCATATGGCGGACCTGTAAATCCCAACATTGCGTTAGGAGGCTTCCATGATGGTGCGTACGAAAATGCTACAGCCTTGATCATAACCTTTGTTGTCAACAACTACAAGGACAAGAGCAAGCTATCCAAAGCAATGGCATGGGAAAAGCATTTCTTAGAGTTCATGCACAATTACACACAAAATAGCTCTAATAAAAACCTTACTATAAGTTACTCTGCTGAGCGTGCCATTCAAGATGAGCTAGACCTTAGCTTGGTATTCAAGTGTATGAGAAGAAATGATTATGCCACTGTGCCTGACCATCCTCAACAGTACAACGGCACTTACCCTACAATATTAGGCTCCTTACCACAAACAGGGGATTCTCGACCTAGTTGTTGTGAGCAGCTGGGTAGCAAATTAGAGTCATTTTTGATGCGGTGGTTCACAAAATGGGGTGTATGGTGTAGCTCCCACCCATTCTCTGTCATGGTGGGATGTCTTCTTGTCGTTGGAAGTCTTGCTAGTGGACTTGTTCGTTTCTCTGTCACTACCGATCCTGTAGAATTGTGGTCTGCTCCAGACAGTACAGCGCGTAAAGAGAAAGACCTTTTTGATTCCAAGTTTAAGCCTTTCTATCGCACTGAGCAGCTTATTATCCACTCGTCCTATCCAGTCCCCACTGGCTATCATCGCTATGGAGATGAAAAATGGATTCCCTTTGGACCAATCTTTCACCTAGATTTGTTAAATCAGgcATTAGACCTTCAGAATGAAATCACCAACATGAAAGTTCCCTATGAAGACACAAACATCACGTTGCAAGATATCTGCTTTCAGCCGTTGGCCCCTCAAATCCAAGTTTGTACCATTCAAAGTGTCTTTCAATACTTTCAAAACAGCAAAACCAAGCTGAACAAGTGCTTAACCAGTATGGGTTATAACTGTAGTACACCAAATGTTTCAGACTTCAGGGCAGCTGATTTCCATGATCATATAATAATTTGTACAAGTTACTCTGCTGAGCGTGCCATTCAAGATGAGCTAGACCGTGAGAGTGACACAGATATTTTTACCATTCTGGCCAGCTACTTGATCATGTTTGCATACATCACCATAGCTCTAGGACAGTTCAAGAGTTGTGACAGAATTTTGGAGGCAAAGCCACACATGTTGTCAACaagaATTGACTCCAAATTTACCCTTGGATTCAGTGGTATCTTGGTAGTGTTATTCTCAGTTCTTTCTTCAATTGGCTTTTGGAGTTTTGTTGGTGAGCCTGCAACCCTCATTATCATTGAAGTGGTGCCGTTCCTTGTGTTAGCAGTCGGTGTGGACAACATCTTCATTCTTGTACAGGCATATCAGCGCCAGGAGCAGCATGCAGAAGGAGATGTGCCTCATAAAATTGGGCGTGTTTTGGGTGAAGTTGCGCCAAGTATGCTTTTGACCTCATTATCAGAGTCTGTTGCATTTGCAATAGGCGCAATGTCAACTATGCCAGCAGTAAGGATATTCTCCCTGTACGCAGCAGCAGCCGTGTTCTTTGACTTCTTGCTCCAAGTTACAGCATTTGTGGCCCTGATGTCTCTAGATGCCAAACGCCAAGAAAACAACCGCTTGGATGTTTTGTGCTGCCTCAAGCTACCAAAAGATGGCAGTGAATCAGACCATATGATTTGTGTCTATACTTTCATGAAGAACTATTTTGCAGAAGGTTTACTTTCAGACTACTCAAGACCTACTGTGatTGTCCTCTTCACTGGCCTTCTGTTTTCAAGCATTGCTACTATCCCTCACATACACATTGGCCTTGATCAAGAACTAGCACTGCCTAAGGATTCTTACCTTCTGAACTGGTTCAGGGACATGAAACAATATCTACATGTTGGTCCACCTGTGTATTTTGTGGTGAATGGAGGCTATGATTATGAACACCCTTTAGGACAAAACAAGATATGTGGCTCAGCAGGCTGCGAGTCCTTTTCTTTAGTGCAACAAATCTACAGTGCTTCACTGATACCTGAGGAATCCAAGATAGCTATGTCGGCATCTTCTTGGTTAGATGACTATTTTAGGTGGCTTGAACCTAGCAGGGAGAACTCATGTTGTCGTATAAAGTACAAAGTTAATGAGACGTGTTTCCATACAACATTAATGCCACATAACTCAACTAATACAACAACTCCAGCACCTGCTGTCATCTGCTACAATGAAACTACACCTGTGGTACCGTTTGTCTTCTGTAATGCAACAGTTGATGATGATTTGTGCAAACCGTGCCTGAATTTAAGCCAGCAAGcctCTTACTTTATGTCCTATCACACAATCCTGAAAACGTCACCAGAATACACAGCAGCTTTGAAGAGCGCACGTGAAATCGGGAAGAACATCTCAAAGACACTTGGTGTGGAAGTGTTCCCATACAGcGTATTCTACGTTTTCTACGAACAATACCTTACGGTTGTAAAGGAAACTTGGGAAAATCTTTTGTATTGTGCAGctgCCATCTTTGTTGTGACCTTCCTTCTCTTAGGATTTAATCTGGGTATAGCGATCATAGTGACCTTTACGGTGGCTCTCATCATTGTAAATTTGATGGGTCTGATGTACATTTGGAACATTTCACTAAACGCCGTCTCACTTGTAAACCTTGTTATGGCGGTTGGTATATCAGTAGAGTTTTGCTCGCATATTGCGCGAGCGTTCACCGTCAATTCTCAGCCCTCAAGGGTAGAAAGAGCTAAGGAAGCTGTAGCAAAAATGGGCAGCTCAgTTTTGAGTGGAATTACATTAACAAAGTTTTCTGGGATCTTAGTACTTTACTTCTCCAAGTCTCAAATATTTCAGgttttctaCTTCCGTATGTATGTTGGCATTGTAATACTGGGTGCTCTGCACGGGCTGTTCTTCCTTCCTGTTTTGTTAAGTTACGTTGGCCCAGCTCCCAGAAAAGTTCCTCCCACAACGACTTCGTCGGATCACACCTCGGCCGTTTCCGAGCGCACGCCGCTAATTAAGGCGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02460 all species →	Patched	Patched family	Family	Interproscan
PF16414 all species →	NPC1_N	Niemann-Pick C1 N terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003392 all species →	Family	Protein patched/dispatched	Interproscan
IPR000731 all species →	Domain	Sterol-sensing domain	Interproscan
IPR032190 all species →	Domain	Niemann-Pick C1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45727 all species →	NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0015918 all species →	Biological Process	sterol transport	Interproscan
GO:0032934 all species →	Molecular Function	sterol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12385	NPC1; Niemann-Pick C1 protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.