Gene detail

Detailed information of PFX16791.1 in Stylophora pistillata

Genomic Location: Spis.scaffold518:16493...25105
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis18906_mrna

ATGGTTGTACAGTTGAACCTCGACTATTCGGACTTGTCGGGACCGCGGAAAACCCTTACTGGAGTGAGAACATCGTCAACCCAAAAAGGAAAATCACATCCATCTGCTGATTTGAAATTGAAGAGAGGATTGGACCTTACCAGGGTTCCAGAGGAAATCCTCTTAAAGATATTCAAATACCTGAGTCCGTCTGAACTGCTGGTATGTGCTCAGGTGTGTCACAAGTGGTCTGCAGTTTCACAAGACAGcTGTCTGTGGGAGCCACTGCTCCCTTATCTTCCGAAGCGAGTTAGAGACACTATAACCTTTAAAGAAGCAAAAGAGGAAAGTTTTGACTGGAAGCATGAAATAATCAAAAGATGTATTCAGGCAAGGAATGAAGACATGCTCAGAAAGCGTGGAGTTTCACCTTACACTGGATTACAAAAAGATGTGTTTCATCCCCTTAGGTATACTGACATTAGATGGAAGCTTTGTGTCACAGACACCTCTCGTAAGGAATATTGGAGGTCATCTGACTGCAGCACACCGTTCCAGTCTTCACTCTGTGTCCGCTGGTATTCTCTACATTTACCACCTCTCTCGAAACTGAAGACACTCCAGGTGTTTGCTTTTGTGCCGGTTTTCTTTAGCAGAAGTTGGAAGCCTCACTATGATAGtgccACTACAAGATCTCTTATCCTCCAATTTGATCTTCGCGGCTCTAAAGGTTCCCAATTGGTTTTTTCACAAGCTACAGCCGTTAGTGGAGCTGGAATGATAACAGCGCATGTGATATGTTCCTCTACATTAGCAGCTTGCTGGAGCGCATCTTGGAAGGTTGGTGGTGAGCTAGCTTTTGTTACACTTTGCCTACATCAGCATAACCTGACCAAAAAAGTCCTCCTGGGTTCGCATTGCAGAACTTTCATACCTTCAGCCCATGTGCCTGTCCCTGATGACATAGACCCAAAGTATGGACTTCATGGATATTCTGCTACAATAGAACTGAGAAATCACAAAACGACTTTCTGGGGACGGCAGTACAGGGAACTCTACCAACAATACTTGGCTGATTCTTACGTTTCCCTTGGAGGTGGCGGCCACGAACATGGTTCATTTACGAGGAAGCTTTCACTTCCTTGGAAAACGGAATTCTTCAAAAACGTCCTACCCgaTATGTGTTTCTTAGATTTGACTGTTCTACATGATAGGAAGCCTTTTTGGTGTTTCAGCTCGCCCGTAAAgatttttatcaacaaagtATTAGATGGTGATTTCACTTCAGACGGAGAGAAACAGTTTATCGAATACAGTGATGAACATGGCACTATAAGAATGGATTTTCTTTGGATCGAAGATGAGGAACAAACACTTGTTACTAACGTTGAGCTGCGTGTCTTGAAGTCTTTTGTAAACTTCTGGTTCCACACGGCCTATTGAAGTCAAATGGTCTCGACCAGTCCCTGTCCCGCGACTCAATACCAGTCCTCCCCGTTAATTCAGAGGAGAGTGTCATTACCCAAGGAGAGGATGGTGATGTTTATCGAATAATGGGGCAAACTACAGATGTATATTAGTTTGGACAGCTGGATGATGGCGTTTTGTGCGTTTTTCCAGCAACTACCTAGTTTATTCAGGCAACggcataaaaaaaagtttgccgCTCATCAGTTAGAATCCCAACTGGGTATTTCTATCAAAGATCTCGAGGCATCATTAGAAATCTCGATTTACTCTGCTAAATACGGTAGTACAAttccaaaaatgttttactgcaaatatcaaagtttttcaaagattttttttttgattttttttgagTACTTAAAGTATATTGCCTGTCTAGGAGCTTGTACCTAGCGAATACTAATAGATCGACCAGTCAGAACACGGGATTTCCgatttgaatttttagttttttaatgaATGGAGAAAAAGCCTTTGTACAGATCAATTTTACATGACGGATTTCGAATAATTTTCTGTTTAGGTCAATAAATAATGTAGAACACCTCTAATTTTCTCCTAATCAACCTTTGACCCAGTGATGAGGTGGTCTGTCTTAATGAGATCGACTTTAGTTCCATATCATCTGCCCCCTAGAAGAGCACAATAAAAATCACCCAAAAACCACAAGAAATTAATCACGGTTCGGTCGAAATGACACAAATAATCGAAAGTGCCATAATTtgcgtttatttttttgatgttataTTTACGACAAAGCCTTACAAATGAATCGATCGGgtttagttttgaaaaaatttgaatatcaaTCGATAAAGCAACCGTTTTTTAGGCCCTCCCCAGACTTgggatttagttgtcgacaactatttgtgatCGACAACTAAAAAACGTAGTCTGTGGCgcaagttgtcgacaactaaaccGCAAATTATTAGTTGTCGACGGCCTCATTTTTAAGCGTTTTTCTAGTgtgtgaaaacttttgttttagttgtcgACTACTTTTAGATCTCCGCGCTATTGTGTTAGCGGCTTTCCCCGCCGGCTTAAAACATGGAGGATTGCAGAAGTAAAATacttggtaaagaaaacatt

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|F-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46731 all species →	F-BOX ONLY PROTEIN 15	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10298	FBXO15; F-box protein 15	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.