Gene detail

Detailed information of PFX17075.1 in Stylophora pistillata

Genomic Location: Spis.scaffold499:176601...192424
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PDZD8

ATGTTTATAGCCTTCATTCTCGCTTTTTTGATCGGGGTATTTTCTGTTTTGCTTTTGGAAGCCATTTTGCTTTACAAATGGTGGAGTTCTACGGGAGTGGATGCTCCAAAACTTTACCCACAGCGCACGAAAGTCACCAATCCAGAGCTTATAGCAGATTACTACAAGAAAGATCAAGCCACTGAACCTGAATCATGTGTCTGTATGAACCTTCTATTTGCCTTTCTGTGGAGAGAATGGCGGGATACTCCACAGATGAAAAGATACTTTTTAAAGAAGATGAACTCAGAGTTCACCGAACTTATTCAAGGAAAAGCAGCAAGCAAACTGATTGAGCAAATCACAATCGAAGAACTTTCACTTGGGACATCATTGCCTGTTATTACAGGTGCAACCATTATGAAGATAGAAACAAAAGATCCAAAGGAAGTTGCCAAAGAATTAGACATAGCCCTTGATCTTGAATATACGGGAGGGTGCCACATGGCCATACAGGTTGATCTTGTTTTCAACAAGTCTGTGTATGTTGCTGTCAAGTTGGTCTCTCTGAAAGGTCGAGCTAGATTACAGCTGAGCAGACATCCCCTGTCACACTGGTCTTTTGCCTTCTATGAGGAACCAGAAGTTGAATTTGAAGCTGAGTCCCAGTTTGAAGGCAAAAACTTCCCTCAACTAACATCTCTCATAATAAGCCATCTTCGCAAGTCTTTACAAAAGAAGCACACCCTTCCCAGCTACAAAATCCGATACAGCCCCTTTTTCCCACAGGTGATTCCTCAGGACGAAACCCAAGAGGTGTATGTTCATAACAGCAGTGTCACTGTGGGTAGCTTAGAGGTCACAGTGGTGGGGTGCACCCGTCTACCTGAGCTAGAGAATGGAGTATCTCAGTACTGTAGTTTGTCTGTGGACCAGCTTCCCTGGAGTCAACTTGTTGAGAACAAAAGAGCAATGTGGCCAACATTTGAGATTGAGATAAGTCGTGAAAACAATGACATATCCTTCGGGCTGACCTTGAATAAAGAGATCAGTGAAGATGAGTTGGGAAAAACCATCGTGATAAACACAATTGTAACTGACTCTCCTGCATACAATGCAGGAGTTATGGCCAAAGATATACTGGTGGCTGTTGATGGGAAAAAGATAGAATCGCTCAAGCAAGCTGCCAAGATGATAAAGAATAAAAGCAGATTCACTGCTACGGTTCAAAGACAGCCTACAAGAATTTCGCAACGAGTCGATCGCGAAAATCCAGAGGACAAACAAGATGGTAAAACTGTAGTGAACTTTAATAATGTCGCACTTTACAATGACAGCGACTCCGAGGATGAATTTGTCAACATCGTGGTGCCACTGTTTGAAGGTGAAGACAACGAAATCGCCAGGTCTGCGATGAAGGAAATGCTGTCACGAACCACTGAACCGAGGCCGAGGGCGGAGAAAAAAATGAAAGGAAGAGATCAGAAATTATCGGCGCAACTGACAAGGGGCTCAAAGCAGGGATCGCCAGCATCCACGCAGCGGACGTACACGAGCCAGACAACTCTTGAAGTGAACGATAAGAAGGTGTCCTTCGACAAGACTCCTCAACCAAATGGCACCGACACTGCTTCGCCAAAACGCCCAAGAAAGGTGTCCCTGACGGTCATGGACGGACTAGACACCAGGAAAACCACGCTGGTGTCAGCAAGCGCGGATCCAGTGTGGAATGAAACTTTCAAGTTTGATATTCCAACCAGTAACCTTCAGTACCTTAACGTGTGCATATGGAGTAAATCACAAGAGAAAAACGAGAAAGACATCATACTTGGCCATGTAACCATTCCCTTGATGGACATTGCACTGCGATGCTTGTCCTTCACGTCAAAAAGACACGAAGAGTGTTTCGTCTTGGTTTCCCCGCACTCCGACAGGATTATATCAAATCAGCCATATCTTCGCAATCATCCCGGTCTTAAAGAGAGTCTGTGCTGTGGAGACATCACATTGATTTTCCATCACAGTCCATCTCTTACGGATTGTGATGAGTCAATCCTTGACAAAGTGGAATCACTGAACGAGTCTGCACCCAAGGATGAAAGTCCTGAAAAAGACACCCTTGAAAGTTTGGAGCCTCCTACACATCAGTTTATCTTAACCCAGTTTTATTTTCCAACAAGATGTAGTTATTGCAACAAAAAGGTATGGACCAAAGTTGCGTTCCAGTGTAGAACTTGTGCTATGATCTGCCACAAGAAGTGTCTGAGGAATTGTATGGGTTATACACACTGTGTAAACACAAAACAAACCACGTCCGGGTGGTTTTGTAGACAGCAATCGAAGTCAGCGCCGGACAAAAAGAATGGAAAACAAGAAGAGAGTAAAGACAATATGGCAGAGTCATCGGCACCCGATGTAGAAGAGGCTTCCAGTGAATCGGATTATGAACCGTTTGCTACCACAAGTGAGAGATCATCGGACGAAGATGAAACAGAGTCAGAAGCGAGAGATGATCTAGTGAATGGAAATGTTAAGAAGTCAGGTCGGACTGAAGGTGCAGCTGAATCAGACGAGGATGTCTCCGATAAGAGAAATGTGAAAGAGGAAGCGACCGCAATCATGAGAGCTTCAGAGCGCGTGAGGGAGGCTGGCAGGGAATTATTTACTAATCTTCCTCTGGAGGCTCGCAAAAGCAAATTAGAAGACATGATGAACAGATTGCAAGTAGAGATTGATGAAGAAAATGAAACGCGTACAGAATTATACGCCCAGAGGAGTAAAATCAAGGAAAGGAAACAGAAAGTTGCTATAGAGTCGTTATTGGCCAAATCAGAAGAAAGAAGTCAAGCATTAGCCATGTTAATGTTACAGTATTGCGCTGGGTATCAGAGCTGTGTGGAGGCTGAAGAACTCGACTCTTATCACTTGTGA

Transcript

rna-Spis18625_mrna

CTTACCCGTTGCTTTGTAGGCAAATTCTCTCATGTTTATAGCCTTCATTCTCGCTTTTTTGATCGGggtattttctgttttgcttttggAAGCCATTTTGCTTTACAAATGGTGGAGTTCTACGGGAGTGGATGCTCCAAAACTTTACCCACAGCGCACGAAAGTCACCAATCCAGAGCTTATAGCAGATTACTACAAGAAAGATCAAGCCACTGAACCTGAATCATGTGTCTGTATGAACCTTCTATTTGCCTTTCTGTGGAGAGAATGGCGGGATACTCCACAGATGAAAAGATACTTTTTAAAGAAGATGAACTCAGAGTTCACCGAACTTATTCAAGGAAAAGCAGCAAGCAAACTGATTGAGCAAATCACAATCGAAGAACTTTCACTTGGGACATCATTGCCTGTTATTACAGGTGCAACCATTATGAAGATAGAAACAAAAGATCCAAAGGAAGTTGCCAAAGAATTAGACATAGCCCTTGATCTTGAATATACGGGAGGGTGCCACATGGCCATACAGGTTGATCTTGTTTTCAACAAGTCTGTGTATGTTGCTGTCAAGTTGGTCTCTCTGAAAGGTCGAGCTAGATTACAGCTGAGCAGACATCCCCTGTCACACTGGTCTTTTGCCTTCTATGAGGAACCAGAAGTTGAATTTGAAGCTGAGTCCCAGTTTGAAGGCAAAAACTTCCCTCAACTAACATCTCTCATAATAAGCCATCTTCGCAAGTCTTTACAAAAGAAGCACACCCTTCCCAGCTACAAAATCCGATACAGCCCCTTTTTCCCACAGGTGATTCCTCAGGACGAAACCCAAGAGGTGTATGTTCATAACAGCAGTGTCACTGTGGGTAGCTTAGAGGTCACAGTGGTGGGGTGCACCCGTCTACCTGAGCTAGAGAATGGAGTATCTCAGTACTGTAGTTTGTCTGTGGACCAGCTTCCCTGGAGTCAACTTGTTGAGAACAAAAGAGCAATGTGGCCAACATTTGAGATTGAGATAAGTCGTGAAAACAATGACATATCCTTCGGGCTGACCTTGAATAAAGAGATCAGTGAAGATGAGTTGGGAAAAACCATCGTGATAAACACAATTGTAACTGACTCTCCTGCATACAATGCAGGAGTTATGGCCAAAGATATACTGGTGGCTGTTGATGGGAAAAAGATAGAATCGCTCAAGCAAGCTGCCAAGATGATAAAGAATAAAAGCAGATTCACTGCTACGGTTCAAAGACAGCCTACAAGAATTTCGCAACGAGTCGATCGCGAAAATCCAGAGGACAAACAAGATGGTAAAACTGTAGTGAACTTTAATAATGTCGCACTTTACAATGACAGCGACTCCGAGGATGAATTTGTCAACATCGTGGTGCCACTGTTTGAAGGTGAAGACAACGAAATCGCCAGGTCTGCGATGAAGGAAATGCTGTCACGAACCACTGAACCGAGGCCGAGGGcggagaaaaaaatgaaaggaagagatCAGAAATTATCGGCGCAACTGACAAGGGGCTCAAAGCAGGGATCGCCAGCATCCACGCAGCGGACGTACACGAGCCAGACAACTCTTGAAGTGAACGATAAGAAGGTGTCCTTCGACAAGACTCCTCAACCAAATGGCACCGACACTGCTTCGCCAAAACGCCCAAGAAAGGTGTCCCTGACGGTCATGGACGGACTAGACACCAGGAAAACCACGCTGGTGTCAGCAAGCGCGGATCCAGTGTGGAATGAAACTTTCAAGTTTGATATTCCAACCAGTAACCTTCAGTACCTTAACGTGTGCATATGGAGTAAATCACAAGAGAAAAACGAGAAAGACATCATACTTGGCCATGTAACCATTCCCTTGATGGACATTGCACTGCGATGCTTGTCCTTCACGTCAAAAAGACACGAAGAGTGTTTCGTCTTGGTTTCCCCGCACTCCGACAGGATTATATCAAATCAGCCATATCTTCGCAATCATCCCGGTCTTAAAGAGAGTCTGTGCTGTGGAGACATCACATTGATTTTCCATCACAGTCCATCTCTTACGGATTGTGATGAGTCAATCCTTGACAAAGTGGAATCACTGAACGAGTCTGCACCCAAGGATGAAAGTCCTGAAAAAGACACCCTTGAAAGTTTGGAGCCTCCTACACATCAGTTTATCTTAACCCAGTTTTATTTTCCAACAAGATGTAGTTATTGCAACAAAAAGGTATGGACCAAAGTTGCGTTCCAGTGTAGAACTTGTGCTATGATCTGCCACAAGAAGTGTCTGAGGAATTGTATGGGTTATACACACTGTGTAAACACAAAACAAACCACGTCCGGGTGGTTTTGTAGACAGCAATCGAAGTCAGCGCCGGAcaaaaagaatggaaaacaaGAAGAGAGTAAAGACAATATGGCAGAGTCATCGGCACCCGATGTAGAAGAGGCTTCCAGTGAATCGGATTATGAACCGTTTGCTACCACAAGTGAGAGATCATCGGACGAAGATGAAACAGAGTCAGAAGCGAGAGATGATCTAGTGAATGGAAATGTTAAGAAGTCAGGTCGGACTGAAGGTGCAGCTGAATCAGACGAGGATGTCTCCGATAAGAGAAATGTGAAAGAGGAAGCGACCGCAATCATGAGAGCTTCAGAGCGCGTGAGGGAGgCTGGCAGGGAATTATTTACTAATCTTCCTCTGGAGGCTCGCAAAAGCAAATTAGAAGACATGATGAACAGATTGCAAGTAGAGattgatgaagaaaatgaaacgcGTACAGAATTATACGCCCAGAGGAGTAAAATCaaggaaaggaaacagaaaGTTGCTATAGAGTCGTTATTGGCCAAATCAGAAGAAAGAAGTCAAGCATTAGCCATGTTAATGTTACAGTATTGCGCTGGGTATCAGAGCTGTGTGGAGGCTGAAGAACTCGACTCTTATCACTTGTGAATGATGACCTCGTTCCATTAACGTCAACCCACAAACCTCTAAgaagtgactggcatctaatttctctatacatttttaCTACTGAATCAAACGTTAAggttatgg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10296 all species →	MMM1	Maintenance of mitochondrial morphology protein 1	Family	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF17820 all species →	PDZ_6	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR019411 all species →	Domain	MMM1 domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR031468 all species →	Domain	Synaptotagmin-like mitochondrial-lipid-binding domain	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR041489 all species →	Domain	PDZ domain 6	Interproscan
IPR039275 all species →	Family	PDZ domain-containing protein 8	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21519 all species →	PDZ DOMAIN-CONTAINING PROTEIN 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0044233 all species →	Cellular Component	mitochondria-associated endoplasmic reticulum membrane contact site	Interproscan
GO:0051560 all species →	Biological Process	mitochondrial calcium ion homeostasis	Interproscan
GO:1990456 all species →	Biological Process	mitochondrion-endoplasmic reticulum membrane tethering	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24060	PDZD8; PDZ domain-containing protein 8	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.