Gene detail

Detailed information of PFX17280.1 in Stylophora pistillata

Genomic Location: Spis.scaffold483:111768...121233
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis18388_mrna

ATGGCGAACGTGGAGAGTGATGGAAGGGCTCTCTCTGAAAAGAGGACACAAGCGTTTGTCTCACTGAGTGTGGCAGTTATCTTCATCTGTATTGGACTTCCACTCTGGTGGAATACTACAAAAGTATACCGAGCATCGCTTCCGTATGATGAAATTGAACAGCTTAACCAACTTAAGgTGAGGTATGTAGTAAACCTCAAAGTAGTTCTTTTTGGTCAACAAGATCCAGTTGCTTTGAAAGAAGAGATCGAGAAGAAGCTCAATACAGAGAAAGGTGATACTTTGATATCAGCTGAATACAGGCTGACAGTTGCAAGGAAAGAAATGACAGATTCTTCAATGTTAACAGAATTAAAAACCAGATCCATGCAAGATTTGGATGACTATTTTCAATTACAAAACAGCTTGGTAAATGCAGAAAGTCAGcattattccttttttgttcTACCCCATGAACCTCCAGAGTTGAACACTATTAAAGGATATGttggcaaacattttcacaGTATATTATTCAATGATAAAGATTCAGCAAAGCTTGCTTCAGTTATTATGGACATTgttggaaatatttttgttaacGAACAAGAAGCAAACAGGCCATTTAACTTGGCTTCGAAAAGGCAATTTGTTAAGgacTCTGTGGAAAGTATGCGTGCACAGAAGTCAACAACAGGTTTGCAGGTGTCCTTCACACTTTTGAACTCTGATCCAGACTCAGTGCTGGCTGAATGGGATATAGAGGCTGCTGTTCAAAAATATTTGGATCCCTTCCTGTTAAATTTTCCTCATCTGGATATAACTGTAGACTCCCAGGTTCTTCATTATAGCAGCCTTCAAATTAATCCCAAGAAGGATGGCAAAATCTTCTCTCTTCACTATGATGACCTACCTCATATGATAAATCCCATTGAAGGCAAACTTGGTTCTCACATCTCTTTGTATCCAAGTTTGAACTTTGTTGTGTATGTCCCATCTATGAAGCATTCACccatttacatgaaaaataaggaTGGCGAGCTGAGCAGTAGCAATGCATTCTTGAGTCCACAGTGGGGTGGAATCATGATTTACAATCTACCACCGACCACAACAACGAATAACACCAAACCGCAAAAGATAACTGTGGAGATGAAACCAATCATGAACGTCTTCCTATCGCAACTTAAATTGTTACTAGGAATGATGTCTGTGAATCTTCCAAATGGTATCGAAGTGAGAATCGCTGATGATGCTGGGGTCACAAAATGGGAACAAGAGTCGCTGATGAGACTTAAAACAATGGAATACTTGGCAACTTCTACAATCACGTTGACGTCACTCGCACAGCTTCTTGGGAAAATCAGCAACATGGTGATCAATGATCACATTCAGCAACAAGTCGAGCAGGCCCTGGGCGCCATTCGTCAGTCTACAACAGCTCTTCAAGATGGAAACGTGACTGCGGCAGTCTTTGCAGCCAAAAGTGCCCTTAGGTCTTCAGAGGAGGCATTTTTTGACCCATCAATACTGGAGCTGTTGTACTTTCCAGACGATCAAAAGTACGCCATTTACATTCCCCTGTTTTTACCCATCAGTCTGCCTGTTTTACTGTCTTTGAGGCAGGCAGTGAGATGGTACAGAGGACACGACAAAGATGGCGAGAAGGACAAAGACAAGGATAAGCAAGATTGAAACAAGCTCTGAACTACAAGAACAACAAAGATTACAGGCTGGGAAGAGAGCACACGGAGTTCAGTCAAATAAGTACATGCGCAGTCTAACTTTATGAGAAAGGAGCTACGGGAAACCATTCCACAGTGACATGATTTTGACTCACAAATAATGCAGAGGTACGAATTACCAGTGAAGACTACAAGAAAATACGTGCAGCGTAGCATACATGCATTTACGAAACACACGACTTAAAGTGCCACAAATCAAAATCCATGCAAAAATTCCCAGCCTACACTGCAGATAACTCGCTCATCCTTGAGGGACTAGGACAAAATGGTAACGTGTCGACGACTAGAGAAGCGCATTCCAAAAGATTTTCAGTGCGGTAGCTCATATGTGAAGAGTACATGTGCAAACCCAGCAGAATGAAACAGAAAGCTTCGCGaagttctgttttcttttcttttctattcttttttgaACAACGAATTTCAACGTAGCAGTTTGCCATTATTTAACTAAGTATCGATTTAGGTAGCAAGGTAAAATGAGAATTTTATCTTTATATTGCGAAAGAGTATTTTGGTAGTCTTAGATATAATTCCCCCCTAGCGCATGTTACGCCTTAtagttcaaaagaaaaactcagttTGTGCTTCACTATATATCGTTTCGTCaagtatgttttattttaaacttgtCCGCCATATATAGTGGAATAAAAAGTTGTGAAAGTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10510 all species →	PIG-S	Phosphatidylinositol-glycan biosynthesis class S protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019540 all species →	Family	Phosphatidylinositol-glycan biosynthesis class S protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21072 all species →	GPI TRANSAMIDASE COMPONENT PIG-S	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016255 all species →	Biological Process	attachment of GPI anchor to protein	Interproscan
GO:0042765 all species →	Cellular Component	GPI-anchor transamidase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05291	PIGS; GPI-anchor transamidase subunit S	-	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	ko00563	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.