Gene detail

Detailed information of PFX17282.1 in Stylophora pistillata

Genomic Location: Spis.scaffold483:70876...90456
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

RBM19

ATGTCCAGGCTTATTGTTAGGAACTTACCAAAGACGATAAAGGAAGAAAGGATTCGTTCTATTTTCGTGGCAAAAGGAGAATTAACAGATGTCAAATTATGCTTCACAAAGGATGGGAAGTTTCGACGGTTTGGGTTTATTGGTTATAAAACTGAAGAAGAAGCGAAAGCTGCGCTGAACCATTTTAACAAATCGTTTATTGACACCTCAAAGATATTCGTAGATGTCGCTAAAAACCTTGGAGATGAAACACTTCCACGGCCTTGGAGCAAATATTCTCAAGGCAGCTCTGCAAATGAGAGACTGAAAAAGAGCTTAGAAGGAAAGAACGAGAAGTTAAAAACCCAGCACTCAGAACGCATAGAAATAGAAAATTGTGAATCAGATGGGTTAAGGAAGAAAAAAGATAAGAAAAAGAAAAAGAGGGCAAAAATTTTAGGTGATCTTGAAGATGATGTTGAATTTCAGGAGTTCTTAAGTGTGCATAAAAACCGTGGCTCGAAGCAAACCTGGAGCAATGACAACATAGAATGTGGAGAGGCAGAATCAAGTGCATATCAGAACCATAGGGGAAGAAAGGAAATTTCTGCTCAGAACAAGCATTCTGAGGAACAAGTAAAATATGATGATTCTGATGGAAGTGAAAATGAAGATGAAGTCTGTGATGTGTCAGGAGTAACAAGAGTTTCAGAGGGAGGGAATGATTCAAAAGACAACAAGGAAAGTGATGAAGAAGCCAGAATGGCTAAGGATTCTAAACTCTCTGATATGGATTACTTAAAATCAAAAGTTGTTTCAAACACACAGAGTCCTCTCAAAACTATGACAAGCAAAAAATCTCAGAAGTGGAAAAGAGTCGATGGAGAGGATGAAGAAGAGAGAGAGAAAGAAAAATTTGGTGAGGAATTTTTGGATACTAGCGGAAGCAAAAATGATCAAGACAGTAATGATGGTGATAATGACAAGGATAATGATGAAGAAAAGACTGATGATGATGATGATTGTAGTGGCAGTGACACAAATAATGATGGTGCAGATACCATTGGTAATAATGATGAAAAAATCAAGCATGAGAGACCAAAGGATGCTGTTGCATGTGGAACAATAAAGATGAAAGGGTTGCCCTTCAAAGCAAAAAACCAACACATCAAAGACTTTTTTGCACCACTGAAAATGCTGGACATAAGAATAATTAAAAATCACCAAGGAAAGCCCACAGGCTGCGGTTTTGTAGATTTTTCAAATGAGAAGGATATTAAGGAGGCACTAAAAAGAGATCGGGATTTCATCCAGGGTAGATACATTGAGTTGTCTAGAGTCAAAGAGGAACAACAGTTGAACCATGAGACTGAGAAGGATAAACCTTGGATGAAGAAATTAGCAGCTCAAGGAGAAGAGGGTGAATTTGAAAGCATTGCAGAGTCTGGCCGTCTCTTTCTCCGTAACTTGGCCTTTAGTTGTTCAGAGGAAGACTTGCAAAACCTGTTTGACAAGTTTGGTCCTCTAACAGAGACATATCTACCACTGGACAAGACTACAAATAAACCCATAGGAATTGGGTTTGTCACATTTGTTATGCCAGAGCATGCTGTGAAGGCTTTTAATGAACTTGATGGCAAAGTATTTCAAGGAAGACTGCTCCACATCTTACCATCCAAGGCTAAGGAAACTAAAGAAGATGAAAAAACAGATGCAACAACATCCTTCAAGTCCAATCGTGATGCAAAAAAGAAAAGTCTCAGCAGTCATGACCACAATTGGAACACATTGTTTTTGGGAATGAATGCTGTTGCTGATGCAATGGCCGATCAGTATCACACCACAAAGGGGAGCATTTTAGATGGTGCTTCTTCTAGAAGTTTGGCTGTACGTATGGCCCTTGGGGAGACACAAGTTGTTACAGAGACAAGGAAGTTTCTTGTATCTCAAGGAGTCCAGCTTGATGTTTTTGGACAGCCCTCGCCGAAAAGGAGTAAGACAGTTATGTTGGTGAAAAATCTACCTTTCAACACATCAAGTGAAGAGCTAATGAACATTTTTTCACCATTTGGAAAAGTGGCAAGGCTTGTGTTGCCTCCATCAGGAATCACAGCTCTTGTGGAGTTCTTTGAGCCAAGCATGGCAAAGAAGGCCTTCCAAAAGTTGGCATATAGTAAATTTAAACATGTTCCATTGTACTTGGAGTGGGCTCCTTTGGATGTTTTCTCCAAAAAACCTGAAGAAAAGAAGGAAGAAGAGATGGCAACAGAACAAAAATTGACCGCTGACAAGGGAAAAGAATCAGCTGAGGAGAAAGCAACGGATGATGCAGATGATGACGGTGATGTTTCAGAAAATGCGGAAGGCACAACTGTCTTTGTGAAAAACTTGAACTTTGAAACATCGGAAGAAACACTGAAAGAGGCATTTTCCAAGATTGGTCCGCTGCTTACGGCAACAATCGCCAAGAAGAAGGATCCTAAAAAGCCTGGAAATTTGCTTTCCATGGGTTACGGATTTGTAGAATACAAGAAAAGATCGGACGCTTTACGAGCAATTACAGAACTCCAGAAATCCCTCATCGAAGGTTATACTCTGGAACTCAAGATGTCTCACAGGAAACCAAGTGAGAAAGTAACACAGCGTAAATCTGCTTCGACCAAGAAGCAAACCAGTTCTAAAATCCTAGTGCGAAATGTTCCTTTTGAAGCGTCAAAGAAAGAAATCAAAGAACTTTTTGGCACTTTTGGGGAGATAAAGACACTGAGGCTTCCTCAGAAGTTGTCTGGAACTGGTTCTCATAGAGGATTTGCATTTGTTGATTTTCTCACCAAACAAGATGCTAAACGCGCGTTTGAGTCCCTCTGTAGCAGTACCCATTTGTATGGGCGAAGACTGGTACTGGAATGGGCCGAGGACGAAGACAGCGTGGATGCTTTGAGAAAGAGAACCGCTGAACACTTTCATGGCACTCCAAAAGCCGCTAAGAAAAAGAAGGATATTCTGGACGATCTTCTCGACTCAGAAATGCAGGAATGA

Transcript

rna-Spis18384_mrna

TTTAAAGATGGTGGATTGTAGTACACGCAGAATTCTGCAATTGTAAATACTCGTCTTTCCCGTGAGAATCCAGGTAATTGGATCATGTCCAGGCTTATTGTTAGGAACTTACCAAAGACGATAAAGGAAGAAAGGATTCGTTCTATTTTCGTGGCAAAAGGAGAATTAACAGATGTCAAATTATGCTTCACAAAGGATGGGAAGTTTCGACGGTTTGGGTTTATTGGTTATAAAACTGAAGAAGAAGCGAAAGCTGCGCTGAACCATTTTAACAAATCGTTTATTGACACCTCAAAGATATTCGTAGATGTCGCTAAAAACCTTGGAGATGAAACACTTCCACGGCCTTGGAGCAAATATTCTCAAGGCAGCTCTGCAAATGAGAGACTGAAAAAGAGCTTAGAAGGAAAGAACGAGAAGTTAAAAACCCAGCACTCAGAACGCatagaaatagaaaattgtGAATCAGATGGgttaaggaagaaaaaagataagaaaaagaaaaagagggcAAAAATTTTAGGTGATCTTGAAGATGATGTTGAATTTCAGGAGTTCTTAAGTGTGCATAAAAACCGTGGCTCGAAGCAAACCTGGAGCAATGACAACATAGAATGTGGAGAGGCAGAATCAAGTGCATATCAGAACCATAggggaagaaaggaaatttctgCTCAGAACAAGcatTCTGAGGAACAAGTAAAATATGATGATTCTGATGGAAGTGAAAATGAAGATGAAGTCTGTGATGTGTCAGGAGTAACAAGAGTTTCAGAGGGAGGGAATGATTCAAAAGACAACAAGGAAAGTGATGAAGAAGCCAGAATGGCTAAGGATTCTAAACTCTCTGATATGGATtacttaaaatcaaaagttgttTCAAACACACAGAGTCCTCTCAAAACTATGACAAGCAAAAAATCTCAGAAGTGGAAAAGAGTCGATGGAGAGGatgaagaagagagagagaaagaaaaatttggtgAGGAATTTTTGGATACTAGCGGAAGCAAAAATGATCAAGACAGTAATGATGGTGATAATGACAAGGATAATGATGAAGAAaagactgatgatgatgatgattgtaGTGGCAGTGACACAAATAATGATGGTGCAGATACCATTggtaataatgatgaaaaaatcAAGCATGAGAGACCAAAGGATGCTGTTGCATGTGGAACAATAAAGATGAAAGGGTTGCCCTTCAAAGCAAAAAACCAACACATCAAAGACTTTTTTGCACCACTGAAAATGCTGGACataagaataattaaaaatcacCAAGGAAAGCCCACAGGCTGCGGTTTTGTAGATTTTTCAAATGAGAAGGATATTAAGGAGGCACTAAAAAGAGATCGGGATTTCATCCAGGGTAGATACATTGAGTTGTCTAGAGTCAAAGAGGAACAACAGTTGAACCATGAGACTGAGAAGGATAAACCTTGGATGAAGAAATTAGCAGCTCAAGGAGAAGAGGGTGAATTTGAAAGCATTGCAGAGTCTGGCCGTCTCTTTCTCCGTAACTTGGCCTTTAGTTGTTCAGAGGAAGACTTGCAAAACCTGTTTGACAAGTTTGGTCCTCTAACAGAGACATATCTACCACTGGACAAGACTACAAATAAACCCATAGGAATTGGGTTTGTCACATTTGTTATGCCAGAGCATGCTGTGAAGGCTTTTAATGAACTTGATGGCAAAGTATTTCAAGGAAGACTGCTCCACATCTTACCATCCAAGGCTAAGGAAActaaagaagatgaaaaaacagATGCAACAACATCCTTCAAGTCCAATCGtgatgcaaaaaagaaaagtctcAGCAGTCATGACCACAATTGGAACACATTGTTTTTGGGAATGAATGCTGTTGCTGATGCAATGGCCGATCAGTATCACACCACAAAGGGGAGCATTTTAGATGGTGCTTCTTCTAGAAGTTTGGCTGTACGTATGGCCCTTGGGGAGACACAAGTTGTTACAGAGACAAGGAAGTTTCTTGTATCTCAAGGAGTCCAGCTTGATGTTTTTGGACAGcCCTCGCCGAAAAGGAGTAAGACAGTTATGTTGGTGAAAAATCTACCTTTCAACACATCAAGTGAAGAGCTAATGAACATTTTTTCACCATTTGGAAAAGTGGCAAGGCTTGTGTTGCCTCCATCAGGAATCACAGCTCTTGTGGAGTTCTTTGAGCCAAGCATGGCAAAGAAGGCCTTCCAAAAGTTGGCATATAGTAAATTTAAACATGTTCCATTGTACTTGGAGTGGGCTCCTTTGGATGTTTTCTCCAAAAAACctgaagaaaagaaggaagaagagatGGCAACAGAACAAAAATTGACCGCTGACAAGggAAAAGAATCAGCTGAGGAGAAAGCAACGGATGATGCAGATGATGACGGTGATGTTTCAGAAAATGCGGAAGGCACAACTGTCTTTGTGAAAAACTTGAACTTTGAAACATCGGAAGAAACACTGAAAGAGGCATTTTCCAAGATTGGTCCGCTGCTTACGGCAACAATCGCCAAGAAGAAGGATCCTAAAAAGCCTGGAAATTTGCTTTCCATGGGTTACGGATTTGTAGAATACAAGAAAAGATCGGACGCTTTACGAGCAATTACAGAACTCCAGAAATCCCTCATCGAAGGTTATACTCTGGAACTCAAGATGTCTCACAGGAAACCAAGtgagAAAGTAACACAGCGTAAATCTGCTTCGACCAAGAAGCAAACCAGTTCTAAAATCCTAGTGCGAAATGTTCCTTTTGAAGCgtcaaagaaagaaatcaaagaacTTTTTGGCACTTTTGGGGAGATAAAGACACTGAGGCTTCCTCAGAAGTTGTCTGGAACTGGTTCTCATAGAGGATTTgcatttgttgattttctcACCAAACAAGATGCTAAACGCGCGTTTGAGTCCCTCTGTAGCAGTACCCATTTGTATGGGCGAAGACTGGTACTGGAATGGGCCGAGGACGAAGACAGCGTGGATGCTTTGAGAAAGAGAACCGCTGAACACTTTCATGGCACTCCAAAAGCCGCTAAGAAAAAGAAGGATATTCTGGACGATCTTCTCGACTCAGAAATGCAGGAATGACTGAGCAATACTCTGTAGCAGGCAGTCGTTTCTCTACGGTCCCAGTTATCCGATGTAATTTCCAAGATATGGTCCAACGAGGGAATAAAAGAAGTATTTTGAGCGAGGGCCTCTCTCAAGGAACGCATATTCATGTCTCGCAGAAAATAACTCGCCacgaatttgaatttttgccgTCAATTTCCGTGGCTGTGATGACGAAGCCGTTTTTCTTCTCGCCAGCCTAACGCTTGAAGAGGACAAGACATGAAATTCACTGTAAACACTTCTCTATGATGTGGTATGGATGAACATCAAATTTTCTCAACAGTTTTGAGGTGAAACAATTGACAATTGGTTACAGGAATCTACTTTCTCAGCTTTACGAGAACTAGGGAAGTCGATATAATCCTTTACTAGGAAAAAAGTCAACGGCGAGTGAAGACGGTATCTTGTGACAAGacaatgaactttttttaatttctctgaatGTTCTCCTGACACTTACTTTGTGCTAGTCTGCAAGAAATAAAGCTAAAAACTAGTGAGAGGGAGAAGCGAAAAGTGTTGACAAGTGTTGGAAATGATGGAAACTGATGGAAACGAaccaaaataaaacgaaaaatatGTGGATTGGACGAAGAGTAGTCTGAATTGAGTTATAACAGCCACTGGGGTGTTACCTCGCCGATTGAACTAACTAAGCTGGCCGTGGAACCTTTCCAACTTTGACGCAGTTGCTGGCATTTTCCCTCCTGTAACAGAAAGGATTCATCTGCCAATTGCAACTCGCCGAGCCTGTTTCTAGTGATCCACCCCTATAGTTACAAGGGTATCCATCTAGGATAGGCAACGGCCTTTGTCTCAGACCTTCCCAGGGGCGTGAGCAGGAAATCAAGTTCCTCGATAGTAGCCCCTTTAGCGAGCATTTCGCCCAACCCACTTCGGTCAATATTCCACTGTTCGATTTATATGATCACAATTGGTTCTTGGCTCAGTTGTGGGACGTCTCTTTCTACTCTACCGTTGGCACCTTATGTTGTAGCTTATTATACCCGTACTTGCTTTTCGTGGGTGTCTTCTAGATCTCCGATTTAAGAGATTCTTTTACCAGGGGTTAAATTAACTAAATAATATTTTACGCATGCGCAGTGAATAGTAattaattacataaaaaattgATAAGGGGAAAATTTATGTAATGCTGATGCGTTTCTTTTTCACCCAGTTCCGAGTGTTTTTATAGCATTTTTCATCAAAAGTCACGTTTGTACTCTTTCTTGTCTTAAACAAAATAGACGTATGTTAATAATGACCGACAATAAGTAGAATTCTCTTGACAAATCATTGTAGAAACTGTTTAGCGATATTTACCAAACAACAGCGGTGTTTTATCAGCTGGGAGTTGGCGACACAATAAAGTAAACGAAATCGTTACGGAAGCTTGTTCTAGAATCAACAGTTTTGATCGAGAAAACGGTTTTATTCGCTGGAAAATAGTCCAAGAAACCTTGACCTTCTCCGAGAAGACCAATGATGTTTAGTATTTATTGATGGTCTCGTgcaattgaaaaggaaaacaagccaatttttaaaaacaagaattttcTGGAGacatatttctttaattaaaaagtaGAATCTTTACCCAAGATGGGATGGTTTCATGAAACTTTTAAATAACGTTCTCCTTTTTTCTAAACGAGAAACATTTTTCTCCAGCGATAAAGAAAAGCAGCTCTTCGTTGGTTTCAAAACAGTTGTAGTTGTTTCTTTCCAAAAGACATAAATTGCTGGAAAAGAAATTTCCCTAAAGCTATTCTGAGCGAATATAGTCAAACTTCTTTGATAGCCAGTATTTACTAATTTGTAGCTTtgttgaaatttgaaagtttgCTAATGCACTTTAAGCTTTTCAAGATATACATTCgctattttttaaatcagtCAAACGATGGAAGTCCAGATTTCCCAAACTTATTGATTAGATTTCGTTATTCGACCTTTTCTTGACAATCCCTGCTCTTCATTAACGTTTTATATGGACATGTAAGGCTCTAACGGGGCTAGAGACACACGTTTACTTTTGGCAACTGAAAATTCTGggaatctttgtttttttgtcataCAAAGGAAGTAGGGAGATTTCCAAAGATCCTGGGGCTATTGAAGTTTGTTATCAAATCACCTAGGGTCATAGATAACAGTGTCGAAAATTCCGTGTAAAGAGCTGACATACTTGTCCCGTTTTACCTTAAGTTTGGCAACTTTTCTTTAGATTGAGACAGAGGTTGATTATTTAGCGGGTATCTCTGTtctctgaaacaaaaaaagaagggTTAAAATCTAGTATCTATTTGGGATTTGTTGAAAATTGCAAGAACTGAACTTTGCTTCAAGAGAAGATCTTGAAATGAGATAAATCTCAAGTAGCGACATCAGCAGCTCAGGATATATATACATCAGTGGGACAATTCAGCAGGAGTAGCTATTCCGGAAACGGAATAGCTACTCCTGTTTACTTTTCTATTTTTAGCTGTTATCAAGGTGTCAAAATTTGCCATTCTCTCCCTAGAGAAATAAAGGAGAACAGCGTTGTCGGAGAGCTTGCATGAGTTACGTGCATTAAAAACGTTCCAGTAAACTTGTCTCTTTACATAAGCTGCTGTTTTAGTCTTGTACATATATTTTATATGGTTGTGTTGCAGCAAAACTACTTGCGACTGTATTAGGTGTTTGCGAATAAACTTAACCTCTTCAAGGAGGGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034423 all species →	Domain	Probable RNA-binding protein 19, RNA recognition motif 5	Interproscan
IPR034421 all species →	Domain	Probable RNA-binding protein 19, RNA recognition motif 6	Interproscan
IPR051945 all species →	Family	RRM MRD1 RNA Processing and Ribosome Biogenesis	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48039 all species →	RNA-BINDING MOTIF PROTEIN 14B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14787	MRD1, RBM19; multiple RNA-binding domain-containing protein 1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.