Gene detail

Detailed information of PFX17302.1 in Stylophora pistillata

Genomic Location: Spis.scaffold483:128941...139823
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis18391_mrna

atgaaACACGGACGAGACACTTTTCACGAAAAGATTTTTTGTGTGCTGTCCGGCGAAAAACTGGGTTTGAACGCGAGTTTTCTCCTTATCCGTTCCCTGAATCCACCTGATCCTGAAAACGAAGTCATGAGGTGTCCAAAGGGAGTTGAAATAACTGGCGGAGTCAAGCCAGAATACAGTCAAATTCTATCATATGAAGCCCTGGAATTTCTTGCTGATTTGCATCGAAGTTTTaactatcaaagaaaaaagctgCTAAGAAAACGACAGGAAATCCAAGCAGAAATAAACAGTGGGAAGCAAATTAAATACCCTGAAGCTCACCATGACAAGGATTGGAAGGTGGCACCTGTCCCACATGATCTGCAGATGCGACATGTGGAGATCACTGGACCAACAGACCGTAAGATGGTGATTAATGCCCTGAACAGTGGGGCAGACATGTACATGGCTGATTTTGAAGACTCACTGACTCCCTCCTGGAAAAATATTGTGGAGGGACAAATGAACCTCTTAGACGCAAACAAGGGGACCATTAGTTTTATCAATGCAGATGGATCAGAGCGGCGGCTGAAGGACAAAACAGCCTGCTTGTTGGTTCGTACCCGTGGCTTGCACCTGGATGAGAAGCACATCCTTTGTGATGGAGAACCCATGAGTGGTGCTCTGGTAGATTTTGGACTTTACTTTTTTCACAACGTCCACATTAGGCTTGCCAATGGCTCTGCCCCATACTATTATCTTCCAAAAATGGAGACTCACTTGGAAACTAGGCTTTGGAATGATGTTTTTAAATCTGCTCAGGATTACATGAAAGTTCCTCAAGGAACCATACGTGCAACTGTTATGTTGGAGACTCTGCTTGCAGGAGTGAACATGGAAGAAATGCTTTATGAGATAAGAGAGCACTGTTGTGCTATGAATGCTGGAAGGTGGGACTACATTTTTTCAGCAATCAAAAGATTCTCCAGAAAACCTGACTGTGTGCTACCAGATCGTAAGCAGATATCAATGACAGTACCATTCATGCGAGCATATACAGAGCGCCTTGTCCAGGTGTGCCATCAGCGTGGAGCTCATGCAATGGGTGGAATGGCGGCCTTTATTCCAAGcagaaaagatgaaaatgtcAATAAGATGGCATTTGAAAAGGTCCGTCAGGATAAGGAGCGGGAAGTGGCTGATGGATTTGATGGCACCTGGGTTGCACATCCTGATCTTGTACCTTTTGCCAAGGGAATCTTTATGAAGGGCTTGCATGGTGCCTCCCATCAAAAACATCGCCTTCGGGAGGAAGTAAATGTCAAGGTTGAAGAGATCTTGTCAGTCTCTGTACCAGGAGGAAAGATCACTGAGGAAGGCGTGCGAGTTAACATCGGTGTTGCTCTTCAGTATCTGAGCAGCTGGTTGTCGGGGCTTGGAGCAGTGGCCATACACAATTTGATGGAAGATGCAGCCACAGCAGAAATTTCACGAGCACAACTATGGCAGTGGCTGCGTCATGGTGTACGACTAGAGGATGGACGTCCCTTCACCCCAGAGTTTTACAAGACCTTACACAAAGAAGAGCTTGAAAAACTTGGAGGTCCATCTAAGAGTCGTTTGGCACAGGCTTCTCACCTTCTAGACAAGTTGGTACTCTCTGAAGAGTTTGAAGAGTTTTTGACTCTGCCAGCATATGAACTTCTTGATAACCCCACAGCCAAGCTGTAGATTTCCAGTTACCTAACTTATAAGTCCTGCAgctcaagtgttcttaattgCTGTACTTGGTTTAATATGGTGTAAAGTTGTCCAGGGATCCACTTTTGTCACAAACAATTGTCTGAGCAACAAGTGCGCATTTATTTAGGTTGGACTCTTGTAAGTGATAATTTTGTGGTTGTTGAAAGGACAAATGTTAGCATCATTAGAGGCCTGTTCTTCTACAGACTTTGAGACTGGTAAACATtgttatttgaaagaaaacatgaatgTAATAATTAAAGTTGAAGGATGATGTAGTGATGGTTTACTAACAATGATGCAGTGACCATAATAAAAAGAGAATCTGTGTGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20659 all species →	MS_C	Malate synthase, C-terminal	Domain	Interproscan
PF20656 all species →	MS_N	Malate synthase, N-terminal domain	Domain	Interproscan
PF01274 all species →	MS_TIM-barrel	Malate synthase, TIM barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048355 all species →	Domain	Malate synthase, C-terminal domain	Interproscan
IPR048356 all species →	Domain	Malate synthase, N-terminal domain	Interproscan
IPR006252 all species →	Family	Malate synthase A	Interproscan
IPR011076 all species →	Homologous_superfamily	Malate synthase superfamily	Interproscan
IPR044856 all species →	Homologous_superfamily	Malate synthase, C-terminal superfamily	Interproscan
IPR046363 all species →	Homologous_superfamily	Malate synthase, N-terminal and TIM-barrel domains	Interproscan
IPR001465 all species →	Domain	Malate synthase, TIM barrel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42902 all species →	MALATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004474 all species →	Molecular Function	malate synthase activity	Interproscan
GO:0006097 all species →	Biological Process	glyoxylate cycle	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005782 all species →	Cellular Component	peroxisomal matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01638	aceB, glcB; malate synthase	EC:2.3.3.9	Glyoxylate and dicarboxylate metabolism	ko00630	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.