Gene detail

Detailed information of PFX17444.1 in Stylophora pistillata

Genomic Location: Spis.scaffold473:69879...80850
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis18231_mrna

GAACTGAGTGCCGAAGTGTTTCACAGCgttgcttgtttttcttttcgaaaaaagagaaattctaTGTAAGCATGGATCAAAATGATCCAGATGATGATAGTTCAAAATCCTCGGATGATGATGCAAGCCCAGATAACTCTGATGTAGGGGAGGAAGGCCAAATTggtCGGCTGAAAGAAGAACTATCAGAGATTCCTTTTTGTGAACTTGAAGAGCTTAAGCATAAAGTTGGCTCCAAAAGGTACAATGAAGCAATTCATGGTCTCTTTGACAAGAAAGGAACCAATGTAACAAAGtcacttaaaagagaaaacaaaaacagGCCAAGAGAATTGTCATCAAAGAAACCAGTTCCCCGACTAAGACAAGTTAttccagttaaaaaaaaaATGGCAAGAGATCCCAGATTTGATGAATTGTCAGGCACTTTCAACcaagaaatgtttgataaagcATATTCTTTCCTAGATGATGTAAAggcaaatgagaaaaaaAAATTACAGAAAGAAGTGCAGAAAACCAAGCAGCCAGAGAGAAAACTACAGTTGGAGTCATTACTGAAGAGAATGGATCAACAAGAAGCCACAAAAAAAGCTGCAGCTCAAAAGAGGGACgtagagagaaagagaaaaaaggcaGAACTGGAATTAGTGAAGCAAGGAAAAACACCTTATTACTTGAAGAAATCTGATAAGAAGAAGTTGGAGCTGGCGGAGAAattcaaaaaactaaaatcgTCTGGGAAGCTGGAGCAGTATCTCAAGAAgcgaggaaagaaaaacacgagtaaagagagaaagaaaatgccGCACAGAAGAGTCATGGAGGTGTGAGGAACGACGAGAGAGTTTTGGAAAAACGGTCAATGCTAATCATACACTCACCAATCATAACATGTGAGCTTGGAGCCCGCGATCACAGTGCGAGAAAGTGCGCTTGAGAAATGTTTGGACGAGGATATGCGAACGGATTGATTTCGTTTCCCTCGACGACGCGACAGGATCGCAATGATTTTCTCCCAATAACGTGAGGAAAATGTTTTCAAGCCGTATGGCTATTCGAATATgaaattcttctcatttttaaCTAAGGTTTTTTTCCACTTACTTTCATCGagaatgtttgttttattatttcaagGAACTTGTACCTTGGTAAAAAGAAACTGGGGCCTTGAGGTAGTGGGGAGTATACAGTTGTCAAATGCTTCCAGTATTTGAGTTACGGGAAAATAGTTAAATTATGCAATGTTTATATAAGAataaaatgaccaaaatttaGCTTTAGTTTTTAATGAGGCATGTAAAGTAGACGTATATTTGGAAATTGCGTGCGCAAAATTTCTTCACGACGCTTGTGACGAAGTGCTAATAAGGAGGGCGAGCTCGCGGGCTACCTCTGGGGCCGTATATTTCATAGACAAGTAATAAAATCCGTGAAAAGTTGTAACTTTATTTTTAGGCACTGAAGCTCATTCTTAcaattgttcttttcttttgttctaaGTTATCGTTAATGCTCTCAACTAAGGAAAACGAATCAGGGCATTACTATTCATATTTGAAATCCGTTTGACTTTGCTATTTTGTTGAGTAGGGAAGGAGACGAAGAGTACTTTGGGTATTTTGGTCGCAGTGTTGAGCAGCAAAACTGGGATAAGGTTATGGAAACTGTCGTTTGAGTTGTTCACCTTCTAAAGGATGTTTGATTTTGAATCATTAATTTTTGGAACTGTAGGGCAACCGTAGCTGAAGTGGTTAGTCGTACCAATCAATCTTTTACTCTTACAAATCAGCGACCCAGTAACCTTGCTGACCCATTGAAAAACTTTACGAAAATTCGACAAAAACAGCGACACGATTGTTGGTTTACATTAATGGTTCGCCTAAGCTCAAAGGTGTTTTCAAATTATGCTTAAAAAATTCACGTGCAAAGTACAGACAGCAAGCAGAGGACATTAAGACATTGATATGTTGAAAGTCGTAACTTCAACTGTTGACCACAACAAGCCTTAACGTGCTGAAAAAGCTAAATGCCAAAAGATCACTAGAAAAATATGTTTAGTTACGAGATAGCGACCTGAATTTTCCCTACAAGAGaaaattctttgattttgatCGTATCGCGATGCGTTCTCTCAGTCAATGTGTTCACCGACGCagcaaatgatg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06102 all species →	RRP36	rRNA biogenesis protein RRP36	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009292 all species →	Family	rRNA biogenesis protein RRP36	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21738 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14795	RRP36; ribosomal RNA-processing protein 36	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.