Gene detail

Detailed information of PFX17480.1 in Stylophora pistillata

Genomic Location: Spis.scaffold470:222455...238533
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis18195_mrna

CGGCTCCAGACTTACTAGTCTTCCAAACATTCTTAATATTTATATTCCTTTGGACTTCAAACATTGAAATATTACTTGGTTCCTTTTGGTCTAAATCAGAGTCATGGCTCAAGTTAGCAACTCCCGACTGAGGGACTCCCAAGCTAATATTGTTAAAGCTACAAACGTCTTCTATAAGGAGCACAATGTCACCCGAGATAAAAGAGGACAAGTTGTCGGTACACGAGGCGGCTTCAGAGGATGTACTGTCTGGTTTACAGGTCTTTCTGGGGCAGGAAAAACCACAATCAGTATGGCCCTTGAGGATCACTTATGTCGACAAGGTATTCCTTCGTACACACTAGATGGTGATAACATGAGAACTGGACTTAACCGTAACTTGAGTTTCACCCCAGAAGACCGCGAGGAAAATATCCGTCGTGTTAGTGAAGTTGCTAAGCTGTTTGCTGACTCCGGCATGATCTGTCTCACTGCTTTTATCAGCCCGTACGAGCGGGATCGTGAGAAGGCTCGCAAGCTGCATGAAGATGCTGGTCTGCCATTCTTTGAGATTTTCGTGAACACTCCCTTGGAAACTTGCGAAGAGAGAGATGTCAAAGGATTGTACAAGAAAGCCAGAGCCGGCCAAATTAAAGGTTTTACTGGTATTGACTCAGCATATGAGCCTCCAAGCAGACCCGAACTGAATTTGAAATCAGGAGAAGTGCCCGTGGACGATTGTGTTCAAGAAGTCATCAAACTCCTTGCAGACAGGGGGATCTTACCATATGCAGCTTACAGCGGTATCAAAGAACTGTTTGTTCCTGAAGAAAAAGTCGAAGAAGCCAAGAAAGAAGCAGAGGAACTGCCGTCTGTTGAGCTAACAAAGTTAGATCTTCAGTGGGTGCAAGTTCTTTCTGAGGGCTGGGCCACGCCTCTGAAAGGTTTTATGAGAGAGCGTGAATTTTTGCAGTGTCAGCATTTTGGACTCTTGCTAGACGAGGGCGTGGTCAATCAGTCCATTCCCATCGTGCTCCCTATTCAGACCGCTGACAAGGAGAGACTGGAAGATAAAAAAGCCTTAGCTCTGCGATACGAAGGAAAACCAGTAGCTATCCTGAGAGATCCGGAATTCTACCCTCACCGCAAAGAAGAACGATCGGCCCGTCAATTTGGATTAACGCATGAAGGACATCCTTACATTAAGatgatttatgaaagtggtgatTGGTTTGTTGGTGGAGACTTAGAGGCGCTGGAAAGAATCAAATGGAATGATAAACTTGACGAATACCGAAAGACTCCGAATGAACTCCGAGCTGAATTCCGACGACGCGATGCTGACGCAGTGTTTGCTTTTCAACTTCGTAACCCAGTACATAATGGACATGCGTTGCTTATGCAGGACACCCGACAGAAGTTACTTGACAGAGGATTTAAAAAGCCAGTATTATTACTACATCCCCTTGGAGGGTGGACTAAGCAAGATGACGTTCCATTACCAGTACGAATGGCACAACATCATGCTGTAATGGAAGAGGGTGTACTGGACCCTGAAAACACAGTCATAGCTATATTTCCCTCACCTATGATGTACGCTGGTCCTACAGAGGTTCAATGGCACGCGAAGGCGCGTGTGGCAGCTGGGGCAAATTTCTTCATTGTAGGACGTGATCCTGCTGGGATGCCCCATCCTGATCCCAATCCAAAGAGGGATCTTTTTGATCATTCACATGGCAGAAAGGTTTTAACTATGTCACCGGGACTCACACAGCTAGAGATTGTCCCTTTCCGTGTGGCAGCGTACAATACTAAAGATAAAAAGATGGAATTCTTTGATCCTGAGCGAAAGGaagaatttgatttcatttctgGAACACGTATGCGTGCATTGGCGAGGGCTGGAGAGGAACCTCCGGATGGATTCATGGCGCCAAAAGCGTGGAAGATTCTGTCCAATTTTTATCGTTCTCTCAACAAGAATTAGTGATTGCGTCATGTACGCTCAAAGAATGGTAGTGCTTTATATTACGCTACAAGTATAGCATTTGCAACAGCCTTCGATTTTACTTATTTTAGTCAGAGCAGAAATTGATTTTAAGTCTGTCGTGAATCGATATGAAACcctatcttaaaaaaaaagattacgaaagagaaatttcttgcactaattttcatttttcaccaGACATTCTCGTGCTTTGTTATAGACACCTCTGTAGTAATGGTTTTTCAAATTCGTGAAGTCTTTCAGAGTTAGGGTGATCATGAAAGTTCAGAACCTCATCACTGAATCAAATAATTTTGCGAACTCTCAAAACCGCGTGCAAATACTGAGGGCTCAACCAGACCCAACCTCATTCACAAGCAGAAccagaatgtttttttttttcaaatgagcCGTCTTCAAATCGATTTTCGTCAGACTTAATATTCTCAAAGAACCTTTCCATTGTCAGTGAAGTTGCCATTATCAAATAACGAGGAACTTTTCCTTGGGTACAGTACATTAAATCAGTAGTCCTTTATTTTCCATACAGTGATGTTCATTCGCGctaaatttttaatgtttttcaacTCAGGTGGAATTATCACCCAGTTACTTGTAGTTATTGTAGTTAGgttttcgtttttcaattttaaacacatttttcGTGGAAAGTTCGAGCCGAACTCTCGTACAAACTTTGTGATGTCTTAGTAAATTTGAAGCGATATTCAATATTTTCATCTTACCTCAAATGATTAAGTCTCCTTTCGTCTCTTAATGACTTCTTCACTGTTAGTGGTTTGCACTCTTCTCACCCCCTTTACTGAGCCATGTCTCTGTTTTCATCCAAGAGAACGTTTGCTAGCGTACGACCATAGTGTATTCTCTGTATCCAGTTGTTTTTTCACAGTTAGCCTAAGCTCGACGTGTTCGACGTGTATTCTCTGTATCCAGTTGTTTTTTCACAGTTAGCCTAAGCTCGACGTGTTCGACGTGTATTCTCTGTATCCAGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01583 all species →	APS_kinase	Adenylylsulphate kinase	Domain	Interproscan
PF14306 all species →	PUA_2	PUA-like domain	Domain	Interproscan
PF01747 all species →	ATP-sulfurylase	ATP-sulfurylase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR002891 all species →	Family	Adenylyl-sulfate kinase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002650 all species →	Family	Sulphate adenylyltransferase	Interproscan
IPR025980 all species →	Domain	ATP-sulfurylase PUA-like domain	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR024951 all species →	Domain	Sulphate adenylyltransferase catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11055 all species →	BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000103 all species →	Biological Process	sulfate assimilation	Interproscan
GO:0004020 all species →	Molecular Function	adenylylsulfate kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004781 all species →	Molecular Function	sulfate adenylyltransferase (ATP) activity	Interproscan
GO:0050428 all species →	Biological Process	3'-phosphoadenosine 5'-phosphosulfate biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13811	PAPSS; 3'-phosphoadenosine 5'-phosphosulfate synthase	EC:2.7.7.4 EC:2.7.1.25	Monobactam biosynthesis	ko00261	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.