Gene detail

Detailed information of PFX17674.1 in Stylophora pistillata

Genomic Location: Spis.scaffold457:190476...204838
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis18003_mrna

AGATAATCAACATGGCGGTTAATGTGAAACGCATTGCAACGCAAATACCCGAATTAACTCTTTTTGCGAAAACAAGTCCACGCTTATTTGTCTGTAGATTTCTCCATGGAGCAAAGTTTACTAGGTGGAAATTTCGTCATCGTACCGCTACAAGGTGGTCTGCCCCTCGAACTTGCGAAGAAAGCACCTTGAGCGATATCGGTGGATTAGAGGCTTGCATTAAGGAAGAAAAACTAAAATCCCTCAGTGAAAAAGGACTCAGATTTGTTGGTGACAAAGCAAAGACAATTGGACAACCAACACCCGAGTCACATCCTCACCTCATGGAGGAAAACGAAATCACCCCTGGAATTACCAAGAAGGAATTCAGAGACAGGAGACACAAACTTCTAAGTTTACTCTCCAAGACACATTTTGGTGAAACTCACGATAAGCATTTGGTGATTATTCCAAGCAATCCAACAAAATACATGACTACAGATGTGCCatatccATTCAGACAGAACACAGACTTTCTGTACTTAACTGGTTTTCAAGAACCAGATGCTGTTTTAGTATTACaaaCCTTAGAAGGCCAGTCATTGCCAGCACATAAGAGTACCTTGTTCATTCAACCACCTGACCCCAAAAGggAGTTGTGGGAAGGTAAACGGCCTGGAACAAAGGATGCTATTCTATTCTTTGGATTTGATGAGTCATACTCTATCAGAAATTTAGCTCCTGTTCTTATTGACAGGTATGCTGGAAGGGACTTCTGTGTGTGGTATGATTCCTTACGTCCTACCCACCCTGTGATCCATGATGAAATTTCCAAGATTCTATTCCGCACAGAGAAGTTCAGTTATAAAAacTTGTTAGCTCTGGGTCACAATGTTCACATGCTGAGACTGATTAAATCTGAAGCAGAAATTAAACTTCTAAGGCAATCAGCCTCACTGACAGCTCAGGCCATTACAAAGGTAATGAAAAGTACCCGTCCAGGACTGGAGGAATCTCATCTTCATACCATCCTTCAATATGAATGTCGTATGAGTGGGGCTGAGCGGCTGGCATACCCCCCTGTGGTGGCCAGTGGTCCAATGGCCAACACCCTTCACTACATTAATAACACACAGGTTTTAAGAGACGGAGAGCTGGTCCTTATGGATGCGGGAAGTGAATACCATGGTTACGCCAGCGATATCACCAGGACTTGGCCGGTCAGCGGTAAATTTAGTAAGCCGCAGAAAGAACTCTATGAAATGGTACTTAGAGTGCACAAGAAATGCTTACAACTTTGTCAAAAGACGGTTTCTCTTGACTATCTTCATCATGCCATGTTGCTACTCCTCGGAGAAGAACTCATTGGTCTCAATTTTATTTCGAAGAACCTGACCGAAAGTCAGCTTAAAAAGGCTGCCGCTGAATTTTGCCCTCATCACGTGGGCCACTATCTGGGTATGGACACCCACGACACGCACATGGTTAGCAGAGGCCTGGGACTACATCCCGGTATGGTGATAACAATTGAGCCTGGGATTTACATCTCTGCGGATAACACCAAAGTACCAGAAAGgTACCGAGGGATAGGAATAAGAATTGAGGACGATGTACTGATTACTGAGAGGGGACCTGAAGTTCTTACGGCGGAATGCCCAAAGGAGATTGAAGACATCGAAAGACTCATGAACAACACAGAAATTGCGAGACTATAAACACATTGAAAATTAGCTTCGTTTATCTATGACAAATTACGCTACCCGCAAGTTTTTGTTACTGGTGAAACCTCTTTTTGAAGATCGCACCAAAGTGTTTGCGATTTAAGAGTTGTTGTTTGCTTCGTTTGCTGGTTGGATTCTTCGCGAATGTCAGACATTTTTTATCTTCATAGTTTTATGCCACTTGGCATGTTTACCATCCTTTGTGCACATATTTCTGCTAGTTGGCCGCGAGGATTGAAGTGACAAAATCGCGACGATGTGTGCGAAGATATTTGAAAAGTTGGAAGGTCTGCAATTTTTGCTCTCTTTGTACTGAGGGTGGTGATGAGGGAAAATTAAGAAATGTATTTCACCATATCActgagactaggtttacactagaggaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05195 all species →	AMP_N	Aminopeptidase P, N-terminal domain	Domain	Interproscan
PF00557 all species →	Peptidase_M24	Metallopeptidase family M24	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029149 all species →	Homologous_superfamily	Creatinase/Aminopeptidase P/Spt16, N-terminal	Interproscan
IPR036005 all species →	Homologous_superfamily	Creatinase/aminopeptidase-like	Interproscan
IPR007865 all species →	Domain	Aminopeptidase P, N-terminal	Interproscan
IPR000994 all species →	Domain	Peptidase M24	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43226 all species →	XAA-PRO AMINOPEPTIDASE 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004177 all species →	Molecular Function	aminopeptidase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0070006 all species →	Molecular Function	metalloaminopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01262	pepP; Xaa-Pro aminopeptidase	EC:3.4.11.9	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.