Gene detail

Detailed information of PFX17773.1 in Stylophora pistillata

Genomic Location: Spis.scaffold449:149826...154093
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis17884_mrna

CGGCCATATTTAAGTGTATTTTGATCGTCATCAAATGAGCTGGAATTCtgttatttttatcactgtAACTTTGCGGTAAACGAAGGAAAGATGAGTTCTAAACCTGTGCGAAGAGAGCCTGTTAatgtttgtgttgtttgttgtgAGGACATCGAGTTTTTCGCCGTTGGAGTGTGTGACCATCCTGTTTGCCACAAGTGTTGTGTTCGAATGCGTGTACTTGGGAAGGAAATTTATTGCCCTGTTTGCCGAACAGAACTGCAGCAGGTATTCATAACCAAAGATAGCATCAGTTATAGAAAACTTGCTGCTAGAAGGGGTTCCTCTGTGATCGATAAACGACACAGTATTCATTACCAACAAAAGGGTATCCAAGATAAAGTGAAGGAACTCCTTGAACATCGCTGTCAGTTCTGCCCAAGCCGCCAGCCAGAGAGATCATTTGATCGTCTCCGTGATCACATGAAGCGGGAACATGAAAAGTTCTATTGTGATCTTTGTGTGGCTAATTTGCAAAAGTTCAGCTTTGAACTAAAAGCCTACACTCGTTCTGAGCTGGCACGACACCGTAGAGTTGGTGACTCTGATGACAAATCCCACAAAGGACACCctctttgtaaattttgtgATCAGCGTTATCTGGACAATGATGAGCTTCACAAGCACCTGCGCAAAGATCATTTCTGGTGTCACTTCTGTGAACGGGATGGAAGTCAGGACTACTACCCCAATTATGAACATCTGCGAAAGCACTTTCGTGATTTTCACTTTCTCTGTGAAGAAGATGATTGTATTCATGAGCAATTTACTTCTGTCTTTCGAACAAAGGTTGATTTTCAAGCACATCGGGCTGCAAAACACTCTGGAAAGTTGAGTAAAGCACAGGCTCGTCAGGCTCGTCAGTTAGATGTTGATATAACTTTTGCTCCTCGGCCAAGGCCTCAGACAAATCATGGTTCAATTGCTGGCAGAGATTTTGTGGAAGTAAGAAGTTCagaacaaagaaaggaaaagagagaaaaagggggaaaaagaggaaactttTCAGGGCCAAACAGGAAAGAAGCTTTGGAGTTACAGACTGCCATGGCCCTTTCTTTGAGTGAATCTGCAAGGGACCCTTCACAGCTTCCCTCACCCTCATCTAAGCCACAAGAACCTAAGAAGCACAAGCCAGAGGAAAAGGGAGCAGTTGGAGGGCTACCTGACAATGAAACAGAAGCATTAGCTCAATTTCCAGCTTCGCTAGGTTCTCTAGAGGTTACAAATGTTGATGAAGGGTTCAAGAAAGGTAGCAAACCCAGTAAACCAACTACATATGCTTCTGCTTCTACTCAACCATACTCTGTTGATGACTTCCCCTCTCTGTCTACATCTGGTGAAAGATTTGAACCATCACCCACCGTACCTCCAGGATTTGCTTCACCAGCTCGTCAGCCTCCCCCTTTAGCTGTAACACAGCAGACTTCTCGTGCTAAGCCCCCTCCTGGTTTTCAGACACTCTTTGAGCCAACCTCTAAGGAGAAGGTTAAAGAAAACGTTGCACCTTTACAAGAACCAACAATCACTAAAACAGAGGTCAAAGCAAACAGTAGTGTGCAAGAGAGAAATCAAGCTTTAGTGGATAAAATTAGAGGTTTATTAGGATATAAGTCCAAATTTGAAGAGTTTAAGGAATTATCTGGAAAGTTTCGTAAAAGTTTTTGTTCAGCAGAAGAGTATTATGCTCAGTGTTGTGAATTATTTGAGTCAAACTTTTCCCAAGTTTTTACAGAACTGGTAGATTTATTGCCTGATCCTGATAAACGAAAAGAACTGTTAGCTGCCCATCAAGATGCTAAAATTATGGAAAAGCATCAAGGGCATAAAAATAAAGCTGGAATGGTGAACAAAAAGCCACAAATGTCTGGGGTGTGGCAAACTGGTGCCACTGCGTGGAATGTGGAGACAAACATTGGTGGTATATCTGAAAGAGATTTTCCAGCATTGCCTGCAGCATCTAAACCATCTTATCAGCAAAGATATAAAGCACCAAAAAATGCCACTATGCTCAAAGAAGCATGGATTCGAGGAAAATAAGTTCCTTTTCTACAAAATCGTGCCTAGTTTTATCGTCTTTTAAGGGTGATTTGCAGTTTATCTTCTGTCTTTTCCTATTTTGAGGACATTCGACCTTACAGTCGTATTGTGTTACATCATTAATAAAAttgtttgagttttaaaaaagttataGTTTTATAGATACATGTATAGTACATAAACACTATTAGTGGTTGGTACCTTAGGGCTCTACCATTAAAG

Protein

Pfam domain

No Pfam domain signature was detected for PFX17773.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR041888 all species →	Domain	ZN598/Hel2, RING finger	Interproscan
IPR044288 all species →	Family	E3 ubiquitin-protein ligase ZNF598/Hel2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22938 all species →	ZINC FINGER PROTEIN 598	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0072344 all species →	Biological Process	rescue of stalled ribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22381	ZNF598; E3 ubiquitin-protein ligase ZNF598	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.