Gene detail

Detailed information of PFX17812.1 in Stylophora pistillata

Genomic Location: Spis.scaffold447:97453...107977
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13774 all species →	Longin	Regulated-SNARE-like domain	Domain	Interproscan
PF00957 all species →	Synaptobrevin	Synaptobrevin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010908 all species →	Domain	Longin domain	Interproscan
IPR001388 all species →	Family	Synaptobrevin-like	Interproscan
IPR042855 all species →	Domain	v-SNARE, coiled-coil homology domain	Interproscan
IPR011012 all species →	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR045848 all species →	Domain	YKT6, SNARE motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45806 all species →	SYNAPTOBREVIN HOMOLOG YKT6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005484 all species →	Molecular Function	SNAP receptor activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08516	YKT6; synaptobrevin homolog YKT6	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.