Gene detail

Detailed information of PFX17844.1 in Stylophora pistillata

Genomic Location: Spis.scaffold446:177538...183306
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis17823_mrna

AAAGATTAAAAACTGATCAAATCGAAGTTTACAAAcgatttgaaaatattttattccctCAAAATGATGGAATATGAGTATGAAATAGACCCCAGGGGACTACAAGGAAAACCAGGATCGGTGGTGTTAAAAAAAGACAAGCAAAATTTAATAGGAATAAGCATCGGTGGAGGAGCTCCTCTTTGTCCTTGCCTGTATGTAGTTCAAGTATTTGATAACACTCCAGCTTCCCGAGAAGGTGTGCTTCAGGCAGGCGATGAAATTGTCGGTGTCAATGGAAAATCTCtcagaggaaaaacaaaagtcgACGTGGCTCGAGCTATTCAAGCCGTTAAAGAAGAAGTTACCATAAACTATGTCAAGCTACATGCTGAACCAACAGAAGGAAAAACTCTGGATATTAtattaaagaaaatgaaacatcgCATAGTAGAACACATGAGTTCATCAACTGCAGATGCTTTGGGTCTCAGCAGAGCAATTCTCTGTAATGATGGACTGGTTAAAAAAATGGAGGAACTGGAGCAAAACTCCAATATCTACAAggGTCTTCTTGATCATGCCAGACAGTTTCTACAAAGCTTTTATAACTTAGCTCAAACACATAAAGaaCTTGGAGAAATATTTGCTTCCATTGGTGTAAGAGAATTGCAGCCAAATGCGAGTGAGGCATTTGCAATTTTTAGTGAGGCTCACAGaaactttGAGAAGCTAGGAATGGATTATTTGAAGAAAGTCAAACCCATGTTGAGTGATTTGAACACTTATCTTTCTAAGGCTATTCCAGATACCAAATTGACTATCAAGAAATATGCCGATGCTAAATTTGAATATCTGTCATACTGCTTGAAAGTAAAGGAGATGGATGATGAAGAGTATGCTTATGCGGCATTGCATGAATCGCTTTACAGAGTAGAGACTGGAAACTATGATTACAGGGTGGTATTGCGGTGTCGTCAGTTAGCCAGGGAGAGATTTGCAAAACTACGATCAGATGTTCTAGTGAAACTTGAACTTCTTGACCAAAAACATGTACAAGACATTGTTTTTCAACTACAGCGGTTTGTTGCAGCAGTTACAGAATATCATGAGAACTGTTATTCAGTGTTGAAGGATGCCAACGTTTTCCCTATTGAGGTTGATTTAACAAGAGGAGCACTGGGAAACCCACTCAAgtaaatttcaactttattccATCAGACAAAATGATGATAGTGAGGATAAAAAAAGCGCACTTACACAGGGAACAGTAGGGCAACTGATATCTCTTTGTCATCTCTATATCCTTAACGAGCTACATATTACAGTATTttgagtctttttctttttgtgtgtcTGCAAAGCTACCTTCACCTTTATGGGACTAGTACAGAATAATACGTATTGTCAACTAGGCAAAGCTAATTCAAGAAGGAATGAAGATGGTTAATGATGGGGAATATCATTAAAGATCCCAAATGGTAGTTAAGAGGTATGCTAAATATTTCAGGATGCAGAAAACTATGAGTCAGGTCCCTCAACCGTTATCATAATGATTACAACCagcttttaaaaaagtatgaGTTACTCAATTGCCTTATTCAGACTGATTTTTTTGTGGAAGGTACTGTATATGATAATCTTGTTAGTTGCATGCACTTATTAAGTCAGTGAACATACcaacaaatcatttttttcctttggagagATAAGGTTTTAACCTGTCAAATTCTAGTTCAGTATATTTGGACAAAGAAGAAATGAGAAGAttatttgaaaaacacttaTTATGAGAAGTTTTTCTCTACAAGATGTACAATAGTCATGTAGAATCTTAGTTTGTTTATGATGAGGAAATTCAGGTGCATACCAAATGGTATTGTCACTTTTTTGACTGAGTTTGCTTGTCAGGgtggaagagaaaaatataaatacatGTAGCCTGCATATTTGCAGAGGGAAATGCCTATGGAATTATgtttaataaattataattatggaTTGAAGAAGTCAGTGTACAGTCGTGTATTTACACCATCATGGTAAAGTTACAAATAAAGTTTGAGAAACAGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF06456 all species →	Arfaptin	Arfaptin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR037959 all species →	Domain	PICK1, BAR domain	Interproscan
IPR010504 all species →	Domain	Arfaptin homology (AH) domain	Interproscan
IPR030798 all species →	Family	Arfaptin family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12141 all species →	ARFAPTIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019904 all species →	Molecular Function	protein domain specific binding	Interproscan
GO:0002092 all species →	Biological Process	positive regulation of receptor internalization	Interproscan
GO:0005080 all species →	Molecular Function	protein kinase C binding	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0032588 all species →	Cellular Component	trans-Golgi network membrane	Interproscan
GO:0034315 all species →	Biological Process	regulation of Arp2/3 complex-mediated actin nucleation	Interproscan
GO:0043113 all species →	Biological Process	receptor clustering	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24062	PICK1; PRKCA-binding protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.