Gene detail

Detailed information of PFX17960.1 in Stylophora pistillata

Genomic Location: Spis.scaffold439:150887...164137
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KATNB1

ATGGCGGCACAACAGAAGCGCTCATGGAAACTTCAGGAATTTGTGGCTCATGGGTCAAATGTTTCTTGTCTGTCACTGGGGCCAACTTCTGGTCGTGTCATGGTAACAGGGGGAGAGGATCGCAAAGTCAACATGTGGGCTGTGGGAAAGCCAAATGTAATTCTGACTCTGTCAGGCCACACAAGTCCTGTAGAATATGTTCAGTTTAACAGTGGGGAGGATCTTGTTATAGCAGGATCCCAGTCAGGAACACTGAAGATTTGGGATTTAGAAGCTGCCAAGATTGTCAGGACCCTGACTGGCCATAAGAGTAGTATACGTGGTATAGACTTTCATCCTTATGGTGAATTTGTAGCATCAGGTTCTCTGGACACAAATGTTAAGCTTTGGGATGTCAGACGAAAAGGTTGTATTGTCACACTCAAGGGTCACACTGATGGAATTAATTTTGTGAGATTTAGTCCAGATGGCCGGTGGATTATATCAGCTTCTGATGACAACACTGTTAAGTTGTGGGACTTGACAAGTGGAAAACTCCTTCATGATTTTAAGCAGCACACTGCAGCTGTTAATTGTGTTGAGTTTCATCCAAAGGAATTTTTGTTAGCAACTGCCAGTAATGACAGGACAGTAAAATTCTGGGACTTGGAGACTTTTCAGCTGGTGTCTACTATAGATCCAGAAACTAGTGGCATTAGATGTGTGGCATTCCACCCTGATGGACATTCATTGTTCAGTGGAGCACAAGATTCCATGAGAGTGTATGGCTGGGAGCCAGTTAGGTGTTATGACAGCTTTTCTCTTGGATGGGGAAAAGTTGCTGACATTGCAATTTCATCCAACCAACTTATTGGGGCATCATATCATCAGACAAATGTCTCTGTGTGGGTAATTGATTTAGAGCATTTAGAAAACCTTGTAGCAAAGTATAATGATGAGACAGCTGATGTAGGGAATAATGTAATGGGAGGAGCACCAGGGGAAGAGAAACTGGCTAAAGTTGTACCATCTAACAAAACACCACCTAGAAAAGCATTTAGTACAGAGAGACCTCAAACAACATCTTCAAAACCCAGACCCAAAGCTGAACAGCCAGGTGTGCCAGAAGAGCCTTCCAGCAAAGAGGGAGAGTCAAATGACAACAAGAACTTGGCAGCCCCTGATGATATATTTTCAGCAAAGCAGAAACTAGATCGTACACCTCCAAGACAAAAACATGAACCATTTCAGCCTCCCTTAGAGGACCCTCTATCACACGGTCCTTCTAAGCAAGCCCCAGTCGTTAAGCCATCTGCCATTGCTCCCGATCCAGTCAAACCATCCAAGCCTACTTCAGTAAATGAAAATCAACAACACCAACAAATGATACCCTCAGAGAGAGACAAACCAGCTGGACTGGTATTGTCTGACTTTCTCCCATCCAGAGCTCCTGCAATCAATGACCCTTCGCAAAACAATGCCAATTTTGATCAACATAAATTTCAACCAAAGAATCCAGCCATGTCAGAGAAAGATGTCATCTCTACACTGTCAAAAAGTCATGACTCTATAGCAACCATTATGACGGCAAGACTCAAGAATCTTAGTGTTGTTGCAAGACACTGGGGGGATGGCGAAATAAAGACTGCAGTACAAGTTTCAGTAGATATGAATGATCAAGCAATCCTAGTGGACCTGCTCAATGTTCTCTGTTTAAAACAGACATTATGGAATTTAGATGTTTGTTCATTGTTACTTCCTCACCTTAAGGACCTGATAAGTAGCAAGTATGAAAGTTATGTCCAAGCTGGTGCTATAGCAATCAAACTTATTCTGCGAAATTTTGCTCCAGTCATTAAAAGTAACATGGCAGCACCACCAGTGTCCGTGGGAGTTGACCTAGTCAGAGAAGAAAGGTATAACAAATGTCACAAGTGCTATTCACACTTGCAGTCTATTCGCGAAGCTCTGTCCAGTAAAACCAACATCTCTGGCAAAATGGGAAGTCTCTTCCGTGAGATGTCGCTAGCATTTTCCAGCTTGGATTAA

Transcript

rna-Spis17703_mrna

ATGGCGGCACAACAGAAGCGCTCATGGAAACTTCAGGAATTTGTGGCTCATGGGTCAAATGTTTCTTGTCTGTCACTGGGGCCAACTTCTGGTCGTGTCATGGTAACAGGGGGAGAGGATCGCAAAGTCAACATGTGGGCTGTGGGAAAGCCAAATGTAATTCTGACTCTGTCAGGCCACACAAGTCCTGTAGAATATGTTCAGTTTAACAGTGGGGAGGATCTTGTTATAGCAGGATCCCAGTCAGGAACACTGAAGATTTGGGATTTAGAAGCTGCCAAGATTGTCAGGACCCTGACTGGCCATAAGAGTAGTATACGTGGTATAGACTTTCATCCTTATGGTGAATTTGTAGCATCAGGTTCTCTGGACACAAATGTTAagcttTGGGATGTCAGACGAAAAGGTTGTATTGTCACACTCAAGGGTCACACTGATGGAATTAATTTTGTGAGATTTAGTCCAGATGGCCGGTGGATTATATCAGCTTCTGATGACAACACTGTTAAGTTGTGGGACTTGACAAGTGGAAAACTCCTTCATGATTTTAAGCAGCACACTGCAGCTGTTAATTGTGTTGAGTTTCATCCAAAGGAATTTTTGTTAGCAACTGCCAGTAATGACAGgaCAGTAAAATTCTGGGACTTGGAGACTTTTCAGCTGGTGTCTACTATAGATCCAGAAACTAGTGGCATTAGATGTGTGGCATTCCACCCTGATGGACATTCATTGTTCAGTGGAGCACAAGATTCCATGAGAGTGTATGGCTGGGAGCCAGTTAGGTGTTATGACAGCTTTTCTCTTGGATGGGGAAAAGTTGCTGACATTGCAATTTCATCCAACCAACTTATTGGGGCATCATATCATCAGACAAATGTCTCTGTGTGGGTAATTGATTTAGAGCATTTAGAAAACCTTGTAGCAAAGTATAATGATGAGACAGCTGATGTAGGGAATAATGTAATGGGAGGAGCACCAGGGGAAGAGAAACTGGCTAAAGTTGTACCATCTAACAAAACACCACCTAGAAAAGCATTTAGTACAGAGAGACCTCAAACAACATCTTCAAAACCCAGACCCAAAGCTGAACAGCCAGGTGTGCCAGAAGAGCCTTCCAGCAAAGAGGGAGAGTCAAATGACAACAAGAACTTGGCAGCCCCTGATGATATATTTTCAGCAAAGCAGAAACTAGaTCGTACACCTCCAAGACAAAAACATGAACCATTTCAGCCTCCCTTAGAGGACCCTCTATCACACGgtCCTTCTAAGCAAGCCCCAGTCGTTAAGCCATCTGCCATTGCTCCCGATCCAGTCAAACCATCCAAGCCTACTTCAGTAAatgaaaatcaacaacaccAACAAATGATACCCTCAGAGAGAGACAAACCAGCTGGACTGGTATTGTCTGACTTTCTCCCATCCAGAGCTCCTGCAATCAATGACCCTTCGCAAAACAATGCCAATTTTGATCAACATAAATTTCAACCAAAGAATCCAGCCATGTCAGAGAAAGATGTCATCTCTACACTGTCAAAAAGTCATGACTCTATAGCAACCATTATGACGGCAAGACTCAAGAATCTTAGTGTTGTTGCAAGACACTGGGGGGATGGCGAAATAAAGACTGCAGTACAAGTTTCAGTAGATATGAATGATCAAGCAATCCTAGTGGACCTGCTCAATGTTCTCTGTTTAAAACAGACATTATGGAATTTAGATGTTTGTTCATTGTTACTTCCTCACCTTAAGGACCTGATAAGTAGCAAGTATGAAAGttaTGTCCAAGCTGGTGCTATAGCAATCAAACTTATTCTGCGAAATTTTGCTCCAGTCATTAAAAGTAACATGGCAGCACCACCAGTGTCCGTGGGAGTTGACCTAGTCAGAGAAGAAAGGTATAACAAATGTCACAAGTGCTATTCACACTTGCAGTCTATTCGCGAAGCTCTGTCCAGTAAAACCAACATCTCTGGCAAAATGGGAAGTCTCTTCCGTGAGATGTCGCTAGCATTTTCCAGCTTGGATTAA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF13925 all species →	Katanin_con80	con80 domain of Katanin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR028021 all species →	Domain	Katanin p80 subunit, C-terminal	Interproscan
IPR026962 all species →	Family	Katanin p80 WD40 repeat-containing subunit B1	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19845 all species →	KATANIN P80 SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0008352 all species →	Cellular Component	katanin complex	Interproscan
GO:0051013 all species →	Biological Process	microtubule severing	Interproscan
GO:0007019 all species →	Biological Process	microtubule depolymerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18643	KATNB1; katanin p80 WD40 repeat-containing subunit B1	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.