Gene detail

Detailed information of PFX17972.1 in Stylophora pistillata

Genomic Location: Spis.scaffold438:189492...203863
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis17685_mrna

AGCGAACAAATCGCTAGCCGTTTGATTGAGGTCTCGTAGTCTACCGCACAAAATGATACCTTTATAGTACAGTTAAGTAGTCCCTATTAAGATCAGGGGTTCTACCGTTTCCAGGCATGGTAGAAGTAAACGCGGAAGATGTTCTCTCCCATTTGAAAGCCGTTTTCGAAGCTTGTGACCAAAATGGCGACGGTTTCGTGAAGACGCAGGATCTTCTTAGTCTCGGCCAGGAACACGCCAGTGTTGGATTTGAGGAGATAAAAATGCTGATCGAAAAACTCGATCCTGAAGGGTTTGGGCAGATAAGCTTTGACGGTTTTTGTAAAGGAATACATGATTTCCTAGGGGCTAATGGTGATGtcaatgtaaatgaaaagaattcgCACGAGTTAGTGGAAGATGAATCTTTTCCAAGACTGACAATATCTGTGGCAGAAAACGACCAACAGGAAGATAGCTGTTGTGAGAGAGACAGTTCTTACAGTACAACATCAACAAATGATTATAATGGCGATGATGATGACAATTTCCAAGATGAGCTGCAACCTTCAAAGTTTAGTCGCAATCGAAAACAATATTCCACATTCCCACCTCCCACAGGACCTCGGTTAAAACATCGGGCAACTTTACCAGCCATGAATGTTGATATGTACAGTGATAGACATTCACACTCAGATACCAGTGAATATCAGTCTGAAGAAGGATTTGAAGGATTTGGAGAAAGCTTCAGTGAGGATACAGCGTTTGAAGATAGTCCAACATTAGAAAGGAACCATCCATATGCTGAACGCATCTTAAGAAACAACAGAAGATCATCAGCTGCAGCTGCTGCATTTTCGAGCCATCATATGCATCTCTATAAATGTCACTCAGAAAATCCCAGTAGACATAACAGTTTTGATGACCTTATGGGTGATCGAGCACTATCAGATAGTGAAGCAGGAACATCAATGTTTCTCCTAACTGAGCTTAAAAGACTGTCTTCACAAGTGTCACTATTACAAGAGGATCATGCAATGCAAACAGATAAACAGAACAAATttagagaggaaaataaattgttatGTACGAGaaTAAATGCATTAGAAGAACAACTCGAGAGCCAAAAAGTTTCAACAGGGAAACAAGTAGAGGAAGAAAGTTTGAGATACAAAACAGCTTTGACCAAATTAGagagagaaaatgaacaaacattAGAAACACTCAACAGAAAgttACTTCAAGCTGAAGAGGAAATAGAACATCTTAAAAAAGTGGAGCCTATGTTAAGAAAAGAACTAGAGATATGTCATGAGGATAAAAGAAGGCTTCTGAAACAAATAGATAGCCTTGAACTCCAACTTCAAATTAAAACAGATGAAGTGGCTGAGCTAAAAGGAAAGCTAGACACTGAAAGTAAGGGACGACTCGAAGATCATCAACAACATGAACAGgAGCTTGCCCTAGCCTCTGAGCAGCTTTCAGAACTGGAAAAGTATAGGCAGGAAGTAGATCAGAAACTGAAAGACTTTCAAAATGTGGAACAGCAGAAGACTGACTTAGAAAGACATGTTCAGTCACTGATAAAGGAGAACTTGGGCTTGAGAAATTCAAAAGAAGAGCTCAACGTACAACTGCAACAGGATGGGTTCTTTGGTGCAGAACAGAAAGGATCATTGGCTGATGAACTTGTCACagctgacaaagaaaaaatcatcaatGCTCTTAGAGACCAAGAGGAAGAAAACAGGAGGTTACGAGGTTACCTGGATGGATTATTGATGATGATTATGGAACATAATCCTGCCCTACTTGAACTGCGATAACAATGTCTGGCACCTAATTAAAATCATACATACCATTTGTCATTGTTGACATACACACTGTACCATGCACATGTTGGCAAAATAGatgtttaattttatatttgtatgATAAGCAATGGAATGTGATAATTATGAACAATTTTATAAAAGACCTGACACCTTAGTGTTAATCTAGTCTTGGTGTATTTATATCTGGAGAGAAACTCTTTTTTTACCATTCTCAAATAGTGTCTTATAGGTGTGGCTGGACAAAGTGGCcttgcaatattttcttttggacTTGGCTATCTTtgtattcaagaaaaaaaaaaacagaaactagAAGAAATTTCTGTTTATGAGTATATGGTTTTCTTGTTTATTCTGGTGGAATATTAATCAGAGAACAGAATCCTGTATTCCTGTGTTCTTGGAGAACTACAATGCAGAGCATTTACCTTGGGAATAACCACTCACACACCTTGAAAAGGAGGGAAAGTGATGCTCCCAATACAAGGCAGATTTAGGGAGATCCTGAATATAAAAGACTGTATTTTGAGTTGCTGTGAACACCTATGCTATTTAAGAGTGTGAAAACATTTAAGGAATGAAAAACTTGAAAGAGTAATGACTGCTCATGAGGCTCCAGAAATCGTGAGGGAATGAGACGTTTAATAGACAgctcacaatttttttaaaatgctttttttcacTTAAGAGAAAGGTGCCAGAAACATGAATCATTGATGTACATTGATGTTTGTGAACATAACCCCTGCATTTTTTGGTGTACTTTACACATCATAAAGtggaaagatttttttaaggttttgaaGATTTAAATTATTGGATAGCTTCAGTGTATATAAAAATATAGACATTTAAAAATGTGAATTCTCActaaaaattactgaattgtgcAACTTGTTTCTGCtgtgaaatttctctttttgctGAGTAGCAGAATAGGAccaaacatgtttttttttttcgtccccAACATTGAATCGAAGATCTCATACTCTTTTGTGGGAATTATAGGTGGCAAACTGAAGACAGAAACCCCTTAGCATTTCAAGATGTTGTTAGTCACTTTTGACCATTTAGAGGGCGAGTTCAAAGATTTGATTGATGGATGTTACtctattttgtttctttttgtgatGGTGTTTGTCATGTAGTAATAATTTTTGACAAcatgaaatatttataataataataaataataataaatgataaatgatttagcaatggacatccactggg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF09457 all species →	RBD-FIP	FIP domain	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR051977 all species →	Family	Rab11-interacting regulator of endocytosis and ciliogenesis	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR037245 all species →	Homologous_superfamily	FIP-RBD, C-terminal domain superfamily	Interproscan
IPR019018 all species →	Domain	Rab-binding domain FIP-RBD	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15726 all species →	RAB11-FAMILY INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0030139 all species →	Cellular Component	endocytic vesicle	Interproscan
GO:0030496 all species →	Cellular Component	midbody	Interproscan
GO:0032154 all species →	Cellular Component	cleavage furrow	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0032465 all species →	Biological Process	regulation of cytokinesis	Interproscan
GO:0055038 all species →	Cellular Component	recycling endosome membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12485	RAB11FIP3_4; Rab11 family-interacting protein 3/4	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.