Gene detail

Detailed information of PFX18346.1 in Stylophora pistillata

Genomic Location: Spis.scaffold415:147275...148820
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02002 all species →	TFIIE_alpha	TFIIE alpha subunit	Family	Interproscan
PF11521 all species →	TFIIE-A_C	C-terminal general transcription factor TFIIE alpha	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039997 all species →	Family	Transcription factor E	Interproscan
IPR002853 all species →	Domain	Transcription initiation factor IIE subunit alpha, N-terminal	Interproscan
IPR024550 all species →	Domain	TFIIEalpha/SarR/Rpc3 HTH domain	Interproscan
IPR017919 all species →	Domain	Transcription factor TFE/TFIIEalpha HTH domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR021600 all species →	Domain	Transcription factor TFIIE alpha subunit, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13097 all species →	TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001113 all species →	Biological Process	transcription open complex formation at RNA polymerase II promoter	Interproscan
GO:0005673 all species →	Cellular Component	transcription factor TFIIE complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03136	TFIIE1, GTF2E1, TFA1, tfe; transcription initiation factor TFIIE subunit alpha	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.