Gene detail

Detailed information of PFX18523.1 in Stylophora pistillata

Genomic Location: Spis.scaffold406:174045...193482
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

IQSEC1

ATGAGTTCGGTAAAATCTACGCTAGAGGCCCTGACGAGTGTCGACTCTCTAGTGGACACTCTAAAAGCTTGTATTTGGAAGCAAGACAAAATTATACGCGAAAAAAACGAAGAGATTGAAAATCTCAGGTCGAGGGTGAAAGAACTCGAAAAGGAGCGGAATCAACTCCGCCATTATATTGCAAGGGGAAGGGAAGACAGCTTAACAAACGTCAACACTGGTGCAAAAAATATACCGGATGGTGAAAACAGGGCTGTAGATTCCGGAAAGATTTCTCAGGATACGCCAGAGAGAAACAGCTCAACTGGAGGCAGTTCTGATGTTTTTACAACTCCTCAGACCCCAACATCTCCCATGATCACAATAACAGCTGCAGAAACACCACAAAACTCTCCAAAACTTGTAAAGCGTGATACTTTCAAAGCAGTCAAAAGAAATGACAGCCTAAACCGACAGAAATCCTTTTCAAAAAAATATGAACTTAGTCCAGAACTTCAAGACAGAAGCGTGAAGGTTTTGGAGCGACAATATGGAGGCAAAGACAAAGCTCATTGGGCAGCCCGAGTTATTCAATCATACTACCGTAAATATAGAATGGATAAACAATTTAGAAGGATGAGGGCATACTCAGGATCTCCTTTGAAAGATCCATTTAGACCTAAATCAAACAGTGATCCTCAATCTCAAATTACAAGTCCCAGGATGGAGAATTCCTCAGAAGCACAAGTGACACCTGTGCTGCGAATCACAAAGAGGAAGAGTGGAAGTCAAAGAGTCAAGTCAATACTTATTATAGACAATATCAACAGTTTAACTGGTGAAGAACCCCAAATGTATAGCAGTGAAATTGCATTGAATTCTTCCCGGGATAATTTTCCAACAGATCTTACATCAATATTTACAGGAGCAGGAAATAGAGTGGATGCCAAACTGATTGAGCAAAAAGAAGCATTGGATGAGAAGGTGGGTATGAGGAAAGAAAGTATCACCAGTGAAACGGAACATTATGTAAAGGTGGAGGTTGTGGATAATGTGGAGACACTGCCTGATGATGCTTTTGTGAAGGATGGTCTAGTCCCTAATAAGGTTCCCAATGGAGACCTGCCTGGTAGACCAAGAAGAGAAACACTCACTGATGATGGCTCTACCTATGGGAGTGACGATTCAGGGGATGAAATGAGAAGAGACCTTAGCAGTGTGGACAGTTTGGATGGAATCTGCGCACCAAGTCTTACTAGCACTGATGATGACACCTCCAGTCTTTATTCTGAATTTGATTCTGGAACAAAACCCCAGAAATTAGAGACCAGGATTGGTATAAACCATTTCAACAGGAAGCCAGAGAAAGGAATTAATTATCTTGTGGCCCATCAAGTGTTGGAAGACAGCCCTGAAGTGGTAGCAAAGTTTCTGTTGAGCGAATCAGGGATTAGTAAACAGAAACTTGGAGAGTACCTGGGCAATTTGCAAAATGAATTCAACATGGAAGTTTTAAAGTACTTTGTGCAGTCAATGGATTTTACTGGAATGGAGGTTGATGAAGCTCTGCGAGTATACCAGACTTCCTTTAGATTACCAGGGGAAGCACAGAAAATTGAAAAACTCATGCTGGAGTTTGCCTCACGGTATGTTTCATGTAACCCTGTTGACGAGAAGGGTGCTTTGGACACAATCCTGATTCTGGCATTTGCCATTGTGATGTTAAATACTGATCTTCATAGTCCTAATGTGAAACGGAGAATGACAGAGGCTGATTTCATCAACAATTTGAGAGGTACCAACAATGGTGGAGATTTTCCAGAAGAGAGTCTGCTAGAGATCTACAATAGAGTAAAAAAGAAAGCATTTTCTCCAGGAAAAGATCATGTCAATGTTGTGGAGAAACTGGGTAAAAAAATTGTTGGAACAAGGTCACCTTGGACTACACTGGCTGCTCTTCATAGACAGCTTCGATTGCTGACCCCTCTTTACAATGTGCGAGATCCAAACAAGAAGGAGAAAGCTCACCCCAGAGTTATCTTTCTTTTTAATGATATGCTAGTGGCCACTAAAGAACGAGGTAGAGCTGGTCGTGGAGAGGGGATACATTATTACAGCTACAAGCTCTCCTTCTCCTTGTGTGGAGTTAAAGTATCCACCTTTTCAAGGGACTATTACCCTTTTGGAATACAGATTTACTCTAAGCTAGATAGCAGGGTTCTGGCTTATTTTAATGCAAGGGATGAAGAAACAAGAAAGGTGTTTGTTGATGAACTTGTTGACTGCATAGAGGAGACAAATGAAATGGAAAGTGACCGAATCACAACAGAGAAACAGAAGCACCTTGGGAACAGGTTCAACAGATCTGGGGTGGACATGAATCGTGCATCATTAACATTGCCAAAGAAACTGAAGCAGCCATCTCCAGACACAATCAGTTTGATTGACAGTGCAAGTTCAATGGAGTCTTTGGGCACAGGCTTGATGGGATCAAAACAACTGTCAAGTTCACTTTTGAACATCAACGAGAATGGAGAGTTTTCAGAACTGAAGAAAAGCAGCAGTATTTCATCTCTAGATAGTGCTTTTACTGAAGCATACATTGTGGACCTTGATCCAGAAAAGGTCAGAAAAGATGCCAAGAGCAAACACCAGAAAAGAAAAAGAAACAAATCCCAATCCAGAGACAGCAAGTCCAGAATTCTTAGTTCTATCAGTGAGTATAAAAGAAAAAGTGGTAATGAAAGTTCTAATTGGTGGAATTTTAATTTTAATTTAATGTTAATTTTTAGTTTAATTTTAATTTTAATGTTAATGTCAGGGAATTTTGAGTCATCCTAA

Transcript

rna-Spis17111_mrna

aacaaaatggcggtcaCTGATTGATCATTTACTGGTACAATGTGTGGATTAGCGGTTGAATTGCCATTTGTTAACGACCTAATAGCAAAATGAGTTCGGTAAAATCTACGCTAGAGGCCCTGACGAGTGTCGACTCTCTAGTGGACACTCTAAAAGCTTGTATTTGGAAGCAAGACAAAATTATACGCGAAAAAAACGAAGAGATTGAAAATCTCAGGTCGAGGGTGAAAGAACTCGAAAAGGAGCGGAATCAACTCCGCCATTATATTGCAAGGGGAAGGGAAGACAGCTTAACAAACGTCAACACTGGTGCAAAAAATATACCGGATGGTGAAAACAGGGCTGTAGATTCCGGAAAGATTTCTCAGGATACGCCAGAGAGAAACAGCTCAACTGGAGGCAGTTCTGATGTTTTTACAACTCCTCAGACCCCAACATCTCCCATGATCACAATAACAGCTGCAGAAACACCACAAAACTCTCCAAAACTTGTAAAGCGTGATACTTTCAAAGCAGTCAAAAGAAATGACAGCCTAAACCGACAgaaatccttttcaaaaaaatatgaacttAGTCCAGAACTTCAAGACAGAAGCGTGAAGGTTTTGGAGCGACAATATGGAGGCAAAGACAAAGCTCATTGGGCAGCCCGAGTTATTCAATCATACTACCGTAAATATAGAATGGATAAACAATTTAGAAGGATGAGGGCATACTCAGGATCTCCTTTGAAAGATCCATTTAGACCTAAATCAAACAGTGATCCTCAATCTCAAATTACAAGTCCCAGGATGGAGAATTCCTCAGAAGCACAAGTGACACCTGTGCTGCGAATCACAAAGAGGAAGAGTGGAAGTCAAAGAGTCAAGTCAATACTTATTATAGACAATATCAACAGTTTAACTGGTGAAGAACCCCAAATGTATAGCAGTGAAATTGCATTGAATTCTTCCCGGGATAATTTTCCAACAGATCTTACATCAATATTTACAGGAGCAGGAAATAGAGTGGATGCCAAACTGATTGAGCAAAAAGAAGCATTGGATGAGAAGGTGGGTATGAGGAAAGAAAGTATCACCAGTGAAACGGAACATTATGTAAAGGTGGAGGTTGTGGATAATGTGGAGACACTGCCTGATGATGCTTTTGTGAAGGATGGTCTAGTCCCTAATAAGGTTCCCAATGGAGACCTGCCTGGTAGACCAAGAAGAGAAACACTCACTGATGATGGCTCTACCTATGGGAGTGACGATTCAGGGGATGAAATGAGAAGAGACCTTAGCAGTGTGGACAGTTTGGATGGAATCTGCGCACCAAGTCTTACTAGCACTGATGATGACACCTCCAGTCTTTATTCTGAATTTGATTCTGGAACAAAACCCCAGAAATTAGAGACCAGGATTGGTATAAACCATTTCAACAGGAAGCCAGAGAAAGGAATTAATTATCTTGTGGCCCATCAAGTGTTGGAAGACAGCCCTGAAGTGGTAGCAAAGTTTCTGTTGAGCGAATCAGGGATTAGTAAACAGAAACTTGGAGAGTACCTGGGCAATTTGCAAAATGAATTCAACATGGAAGTTTTAAAGTACTTTGTGCAGTCAATGGATTTTACTGGAATGGAGGTTGATGAAGCTCTGCGAGTATACCAGACTTCCTTTAGATTACCAGGGGaagcacagaaaattgaaaaactcaTGCTGGAGTTTGCCTCACGGTATGTTTCATGTAACCCTGTTGACGAGAAGGGTGCTTTGGACACAATCCTGATTCTGGCATTTGCCATTGTGATGTTAAATACTGATCTTCATAGTCCTAATGTGAAACGGAGAATGACAGAGGCTGATTTCATCAACAATTTGAGAGGTACCAACAATGGTGGAGATTTTCCAGAAGAGAGTCTGCTAGAGATCTACAATAGAGTAAAAAAGAAAGCATTTTCTCCAGGAAAAGATCATGTCAATGTTGTGGAGAAACtgggtaaaaaaattgttggaacaAGGTCACCTTGGACTACACTGGCTGCTCTTCATAGACAGCTTCGATTGCTGACCCCTCTTTACAATGTGCGAGATCCAAACAAGAAGGAGAAAGCTCACCCCAGagttatctttctttttaatgatatgCTAGTGGCCACTAAAGAACGAGGTAGAGCTGGTCGTGGAGAGGGGATACATTATTACAGCTACAAGCTCTCCTTCTCCTTGTGTGGAGTTAAAGTATCCACCTTTTCAAGGGACTATTACCCTTTTGGAATACAGATTTACTCTAAGCTAGATAGCAGGGTTCTGGCTTATTTTAATGCAAGGGATGAAGAAACAAGAAAGGTGTTTGTTGATGAACTTGTTGACTGCATAGAGGAGACAAATGAAATGGAAAGTGACCGAATCACAACAGAGAAACAGAAGCACCTTGGGAACAGGTTCAACAGATCTGGGGTGGACATGAATCGTGCATCATTAACATTGCCAAAGAAACTGAAGCAGCCATCTCCAGACACAATCAGTTTGATTGACAGTGCAAGTTCAATGGAGTCTTTGGGCACAGGCTTGATGGGATCAAAACAACTGTCAAGTTCACTTTTGAACATCAACGAGAATGGAGAGTTTTCAGAACTGAAGAAAAGCAGCAGTATTTCATCTCTAGATAGTGCTTTTACTGAAGCAtacaTTGTGGACCTTGATCCAGAAAAGGTCAGAAAAGATGCCAAGAGCAAAcaccagaaaagaaaaagaaacaaatcccAATCCAGAGACAGCAAGTCCAGAATTCTTAGTTCTATCAGTgagtataaaagaaaaagtggTAATGAAAGTTCTAATTggtggaattttaattttaatttaatgttaatttttagtttaattttaattttaatgttaatgtCAGGGAATTTTGAGTCATCCTAATTGCATATACCAAGCTTTGTAATACATTACAACATAATATGACTTTTATAACTCTGATCGAATACATATTGTCTTCTTATTTCTTacctttttatttcatttaagatATTTAATTATATGATAGCCTGAATTATGCATGCATTATTGGTTCTTACTTGTGACATATGGGATTCAAGATGCATGGATGATGCCACCTTCACAAACGTTTTGTCTTCTTTATCatacaaaacaaatacattctaaaaaaaaaagaaaaaaaaaagaaaaaatttactttctaGACAGCAGTTCAAGGCCTCATTGGAACAGTTTGAATGTTTTTAATTAtactgctgaaggacaacatgaac

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16453 all species →	IQ_SEC7_PH	PH domain	Domain	Interproscan
PF01369 all species →	Sec7	Sec7 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033742 all species →	Domain	IQ motif and SEC7 domain-containing protein, PH domain	Interproscan
IPR000904 all species →	Domain	Sec7 domain	Interproscan
IPR023394 all species →	Homologous_superfamily	Sec7, C-terminal domain superfamily	Interproscan
IPR035999 all species →	Homologous_superfamily	Sec7 domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10663 all species →	GUANYL-NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0032012 all species →	Biological Process	regulation of ARF protein signal transduction	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12495	IQSEC; IQ motif and SEC7 domain-containing protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.