Gene detail

Detailed information of PFX18545.1 in Stylophora pistillata

Genomic Location: Spis.scaffold405:138408...152859
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PEX1

ATGAATCGAATTAGATCCGCTTCTGTTAGAACAAATTCGTCGAAAAACTGTTTTGTCAGTCTTTCTGGTGATCTTGCAGAGGCAGTAGGCTTGCGAATTCAGGGTCAACCATTTGCTCTCCAACTTGAGTGGGAAAATGGTAAGGCTTTCACCAGCTGGTCTGGTGAAGTGATACACAGTAGGAGAGGTGATATCCTGAATGATTCATCATCTATTGTCCAATTGGGAAAAAAATTTGCCGATGCACTAGGACTAGATGACGAGCAGCAGGTTTTAGTTGAACCTGTGGTAGGCATTGCATCATGTAACAGAATAAGCGTGGATCCAGTTAGTGCCAATGATTGGGAAATTTTAGAACTCCATGCTGGTTATATAGAAAGTCAGCTTCTAAACCAAGTGAGAGTGGTGTTCCCAGGACAGTTATTGCCAATTTGGATTGAAAACAATATGTGTGTGGTTGTCCAAATTGTTGATCTTGAGCCCAATGCCAATTGTGTCAGACTTGATGAGTTTACTGAAGTGATTGTAACGCCAAAAACAAGAACATTTTCTAAAGGAAAAAAACCTCAGCATGTTTCAGTTCATTCTGGCAATGATAATACAGAACAAGAGAATGAAATTCATGTAGGTGCAAGTGCTGAAAATAAGCATACTTTGACAAGTAGTGCTTTTCATTTTAACAATGGTGATCAGCTTTCATCAAGGCCCTCACCTTCTAAAACCACAAATTCAGAAGAACAAAATGGCATTGTCAATGGTGGCTTATTATCAAGAGTCTCAGGTTATTTGCAGTCTTTATTCAACCCTCATTATGTGGAGAGCTCTGTAAATGGAAAACAGACCTGCAAACCCTTGACCTCAGAAGAAATTAAAAATGAAGAGAACTGGAAACCCTTGTTTTCTTTCACTAATAAAGGTGGAAAATGTTTTACTGGCTGTGTAAATGATTCTGACTTTGAGATGTATTTGAGAGTGCAACCAAAGATAAGAGGGAACCCTGATGCCTCAAATAAAGACAGCATTGTAGCATCTGCGAATTATTATTCCCTGCAACCCACGACTGTGTTTGTTGACTTTACATCTTTGCCGCCACTGGTTTTAAAGTCGTGGACTTGTAACTGGGACACATTTCCACCACCAGATGGCACAGTTGTAAAAACTGTTCAAATACATAGACTTTTATCTCCGAAAGAGAGAGCTGCCTTACAAAATAATAAATCCTCATCAAACAACAATGAAAACCAAGGATCTCAGTCACTAGAGTCTTCAAGAGACAGTGAATCCAACCAGGTGACTGGCCAATCCCCTTCCAATTATCCTGACATGCTACCACCTCGCTGGGTTGTAAGAATTGTGATGACGAGCAGCATAAACAAGGCTTCTGTCAATCAAATTTCCCATGATTTAGGCGTGGCAGAGCATGTACTTCCAGGACATGTGACTCTGACCAAAGAACTCTACAAAATGCTTGGAGCAAGGGATCTGTGTTTAGTTAAAATTCAGAATATCTCATCTGGGCCATCAGACTTCCAAGGAGTTGTTTTGCATCCCTTAGCAGAAACTGAACAGAAGCTTCAGGATATTTCATCTGATGCTGTTGTGGATGCCTTTGAAGGCTGGATCAGCTCTGTGTGCAATGTGGAAGTACCTCTTGTACTCTGCAGTGGAACACTAATGTCATTTGATGTTCAAGGCCAACTTTGTCAGTTTGTAGTTAAATTGCTAAGTCATCAGGAGACATCAACATCAACAGATGAGCCATGTTATTATCACCTCACCCCTGAGACTCTGAACAATGTGACAGTTGTCATAGGAACACTGCAAAACTCTTTGAAGGGTTTCTATGAATCTATAAGTGCTCAAGAAATCAAGCCACATTTTCCAAGGCATAGCTTTAATGATTTGGGGGGTGTAACAGATGTTTTCCGCAAGTGTGTGGATCATGCTCTATCAGTGTTACGACAGCGACCACTATCCAATCAACTGGGAGGTAACATTATCACAGGGCTGTGTGGTGGGGCTGTACTAGTTTGCGGCAGTGGTACAGGAGCAGGGATTGGCTGTGGCAAGACATCTTTTGCTCATGCAGTATGTCACCAACTTCAGGAGTGGCCTGTGTGTGCTCATGTAACGTTAGTGGATTGTATTCCTTTTAGAGGAAAAAGAGTTGATACCATTAAAAAACAGTGGCAGCAGATATTTATGGAGGCTGCATGGCATCAACCATCTGTTATCTTGTTTGATGATTTAGATCAAGTTCTGTCTGCCCCAAGTGCCCTCCAAGAGATGGGTGGAGAAGCTTTGTACAAACATCGCTTAACTCAAGTATTTAAGGATCTTATCAACACAGAAATCAATAACAACAGCAGGATAGTTGTTATAGCAACCAGTAAGTCACATGACTCTTTACACCCGTCATTGCTGACATCGCAAGGATGTCACGTGTTCCAATGCCGTGCGGAGATCCACCCCCCTGATGCTGACCAAAGACAACAGATTCTGTCTGCGATGATGGCCAGACTGTTTCGTCACCGAGATCGTGACATATCGGAACTCAGTTTATTGGCGAAGAAAACTGAAGGATTCTCACCCAAAGATCTACAATCATTAATCGACCGAGCCTTACACCAAGCGGCGGTCAGAAAGATGAAAATGTCGGCAGATGGAGGAATTTTCTCTGAAATTACTACCGATGATTTTGAGAAAGCTCTTAACGGATTTACCCCTACAGCGCTTAGGGGAGTTAGTTTACATACTGCGGGAGAGTTAGGCTGGTCTGATGTGGGAGGACTAGCTGCTGTAAAAGCAGCCCTCATTGAGACCCTCCTGTGGCCAACAAAGTACTCGTGGCTTTTCAGTAAATGTCCCCTGCGCATGCGGTCTGGTCTTCTTCTCTATGGACCACCAGGCACTGGCAAAACACTGTTGGCTGGTGTGGTTGCTAAAGAGTGTGGGCTCAACTTCATCAGTATCAAAGGTCCTGAACTACTGAGCAAGTATATTGGAGCCAGTGAACAAGCGGTCAGAGACATGTTTACAAGAGCTCAAAGTGCCAAGCCATGTATTCTTTTCTTTGACGAGTTTGACTCCCTTGCTCCTCGACGTGGACACGACAGCACTGGTGTAACAGACAGAGTGGTGAATCAGCTTCTTACTCAGCTGGATGGAGTGGAGGGACTGGACGGTGTTTATATCCTGGCTGCCACCAGTCGACCAGACTTGATTGATCCCGCTCTTCTTAGGCCAGGACGATTGGATAAGTGTTTGTATTGCGGTATACCAACCAAGTCAGAGAGATTACAGATCCTGGAAGCTTTATCCAGTTCCGTGACCCTGTCAGAGGATATTGATCTAGCCGTTATTTCAGACTTGTGTGAACACTTCACTGGAGCTGATTTCAAAGCTCTTCTGTATAACGCCCAGCTGGCTGCAATCCACAGGAAAACCAATAACAGTCTGCTTTACAAGGGAGCGTTCAAAACTACTGAAATGGAAAGCACTGAGAAACATAACATAGGCGCGGATACAGATATCGTTATAGACGACGACAGGGATGATATTATTTATGTTCCAAGCTTAACTGAAGGATCAACACAGCTATCAACGGAGGAGCTGACGAAACTTCGTTCAGAGATCACAATTCTCCATGATAATTTACAGCATAGAAAGAGCGAAAGAAAGCCATTACAATCTGATTCAGCGACGCATGAGGCAACGTTTGGAATACAAATCAACCAATCCGATTTGTTACAAGCAGCATCATCGGTTGGTCCATCTGTGTCAGATAGTGAAAGACGCAGATACCAGGCTATATACGAGACATTCGTCAAATCCAGAGGAGGAGACTTTGGTCTCAATACACCAGGCCAGGGAAAGGCAACATTGGCTTAA

Transcript

rna-Spis17086_mrna

atgaatcgAATTAGATCCGCTTCTGTTAGAACAAATTCGTCGAAAAACTGTTTTGTCAGTCTTTCTGGTGATCTTGCAGAGGCAGTAGGCTTGCGAATTCAGGGTCAACCATTTGCTCTCCAACTTGAGTGGGAAAATGGTAAGGCTTTCACCAGCTGGTCTGGTGAAGTGATACACAGTAGGAGAGGTGATATCCTGAATGATTCATCATCTATTGTCcaattgggaaaaaaatttgccGATGCACTAGGACTAGATGACGAGCAGCAGGTTTTAGTTGAACCTGTGGTAGGCATTGCATCATGTAACAGAATAAGCGTGGATCCAGTTAGTGCCAATGATTGGGAAATTTTAGAACTCCATGCTGGTTATATAGAAAGTCAGCTTCTAAACCAAGTGAGAGTGGTGTTCCCAGGACAGTTATTGCCAATTTGGATTGAAAACAATATGTGTGTGGTTGTCCAAATTGTTGATCTTGAGCCCAATGCCAATTGTGTCAGACTTGATGAGTTTACTGAAGTGATTGTAACGccaaaaacaagaacattttctaaaggaaaaaaacctcaGCATGTTTCAGTTCATTCTGGCAATGATAATACAGAACAAGAGAATGAAATTCATGTAGGTGCAAGTGCTGAAAATAAGCATACTTTGACAAGTAGTGCTTTTCATTTTAACAATGGTGATCAGCTTTCATCAAGGCCCTCACCTTCTAAAACCACAAATTCAGAAGAACAAAATGGCATTGTCAATGGTGGCTTATTATCAAGAGTCTCAGGTTATTTGCAGTCTTTATTCAACCCTCATTATGTGGAGAGCTCTGTAAATGGAAAACAGACCTGCAAACCCTTGACCtcagaagaaattaaaaatgaagagAACTGGAAACCCTTGTTTTCTTTCACTAATAAAGGTGGAAAATGTTTTACTGGCTGTGTAAATGATTCTGACTTTGAGATGTATTTGAGAGTGCAACCAAAGATAAGAGGGAACCCTGATGCCTCAAATAAAGACAGCATTGTAGCATCTGCGAATTATTATTCCCTGCAACCCACGACTGTGTTTGTTGACTTTACATCTTTGCCGCCACTGGTTTTAAAGTCGTGGACTTGTAACTGGGACACATTTCCACCACCAGATGGCACAGTTGTAAAAACTGTTCAAATACATAGACTTTTATCTCCGAAAGAGAGAGCTGccttacaaaataataaatcCTCATCAAACAACAATGAAAACCAAGGATCTCAGTCACTAGAGTCTTCAAGAGACAGTGAATCCAACCAGGtgacTGGCCAATCCCCTTCCAATTATCCTGACATGCTACCACCTCGCTGGGTTGTAAGAATTGTGATGACGAGCAGCATAAACAAGGCTTCTGTCAATCAAATTTCCCATGATTTAGGCGTGGCAGAGCATGTACTTCCAGGACATGTGACTCTGACCAAAGAACTCTACAAAATGCTTGGAGCAAGGGATCTGTGTTTAGTTAAAATTCAGAATATCTCATCTGGGCCATCAGACTTCCAAGGAGTTGTTTTGCATCCCTTAGCAGAAACTGAACAGAAGcTTCAGGATATTTCATCTGATGCTGTTGTGGATGCCTTTGAAGGCTGGATCAGCTCTGTGTGCAATGTGGAAGTACCTCTTGTACTCTGCAGTGGAACACTAATGTCATTTGATGTTCAAGgcCAACTTTGTCAGTTTGTAGTTAAATTGCTAAGTCATCAGGAGACATCAACATCAACAGATGAGCCATGTTATTATCACCTCACCCCTGAGACTCTGAACAATGTGACAGTTGTCATAGGAACACTGCAAAACTCTTTGAAGGGTTTCTATGAATCTATAAGTGCtcaagaaatcaagccacattTTCCAAGGCATAGCTTTAATGATTTGGGGGGTGTAACAGATGTTTTCCGCAAGTGTGTGGATCATGCTCTATCAGTGTTACGACAGCGACCACTATCCAATCAACTGGGAGGTAACATTATCACAGGGCTGTGTGGTGGGGCTGTACTAGTTTGCGGCAGTGGTACAGGAGCAGGGATTGGCTGTGGCAAGACATCTTTTGCTCATGCAGTATGTCACCAACTTCAGGAGTGGCCTGTGTGTGCTCATGTAACGTTAGTGGATTGTATTCCTTTTAGAGgaaaaagagttGATACCATTAAAAAACAGTGGCAGCAGATATTTATGGAGGCTGCATGGCATCAACCATCTGTTATCTTGTTTGATGATTTAGATCAAGTTCTGTCTGCCCCAAGTGCCCTCCAAGAGATGGGTGGAGAAGCTTTGTACAAACATCGCTTAACTCAAGTATTTAAGGATCTTATCAACACAGAAATCAATAACAACAGCAGGATAGTTGTTATAGCAACCAGTAAGTCACATGACTCTTTACACCCGTCATTGCTGACATCGCAAGGATGTCACGTGTTCCAATGCCGTGCGGAGATCCACCCCCCTGATGCTGACCAAAGACAACAGATTCTGTCTGCGATGATGGCCAGACTGTTTCGTCACCGAGATCGTGACATATCGGAACTCAGTTTATTGGCGAAGAAAACTGAAGGATTCTCACCCAAAGATCTACAATCATTAATCGACCGAGCCTTACACCAAGCGGCGGTCAGAAAGATGAAAATGTCGGCAGaTGGAGGAATTTTCTCTGAAATTACTACCGATGATTTTGAGAAAGCTCTTAACGGATTTACCCCTACAGCGCTTAGGGGAGTTAGTTTACATACTGCGGGAGAGTTAGGCTGGTCTGATGTGGGAGGACTAGCTGCTGTAAAAGCAGccctcattgagaccctcctgTGGCCAACAAAGTACTCGTGGCTTTTCAGTAAATGTCCCCTGCGCATGCGGTCTGGTCTTCTTCTCTATGGACCACCAGGCACTGGCAAAACACTGTTGGCTGGTGTGGTTGCTAAAGAGTGTGGGCTCAACTTCATCAGTATCAAAGGTCCTGAACTACTGAGCAAGTATATTGGAGCCAGTGAACAAGCGGTCAGAGACATGTTTACAAGAGCTCAAAGTGCCAAGCCATGTATTCTTTTCTTTGACGAGTTTGACTCCCTTGCTCCTCGACGTGGACACGACAGCACTGGTGTAACAGACAGAGTGGTGAATCAGCTTCTTACTCAGCTGGATGGAGTGGAGGGACTGGACGGTGTTTATATCCTGGCTGCCACCAGTCGACCAGACTTGATTGATCCCGCTCTTCTTAGGCCAGGACGATTGGATAAGTGTTTGTATTGCGGTATACCAACCAAGtcagAGAGATTACAGATCCTGGAAGCTTTATCCAGTTCCGTGACCCTGTCAGAGGATATTGATCTAGCCGTTATTTCAGACTTGTGTGAACACTTCACTGGAGCTGATTTCAAAGCTCTTCTGTATAACGCCCAGCTGGCTGCAATCCACAGGAAAACCAATAACAGTCTGCTTTACAAGGGAGCGTTCAAAACTACTGAAATGGAAAGCACTGAGAAACATAACATAGGCGCGGATACAGATATCGTTATAGACGACGACAGGGATGATATTATTTATGTTCCAAGCTTAACTGAAGGATCAACACAGCTATCAACGGAGGAGCTGACGAAACTTCGTTCAGAGATCACAATTCTCCATGATAATTTACAGCATAGAAAGAGCGAAAGAAAGCCATTACAATCTGATTCAGCGACGCATGAGGCAACGTTTGGAATACAAATCAACCAATCCGATTTGTTACAAGCAGCATCATCGGTTGGTCCATCTGTGTCAGATAGTGAAAGACGCAGATACCAGGCTATatacgAGACATTCGTCAAATCCAGAGGAGGAGACTTTGGTCTCAATACACCAGGCCAGGGAAAGGCAACATTGGCTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09262 all species →	PEX-1N	Peroxisome biogenesis factor 1, N-terminal	Domain	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR009010 all species →	Homologous_superfamily	Aspartate decarboxylase-like domain superfamily	Interproscan
IPR015342 all species →	Domain	Peroxisomal ATPase PEX1, N-terminal C-lobe	Interproscan
IPR029067 all species →	Homologous_superfamily	CDC48 domain 2-like superfamily	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR050168 all species →	Family	AAA ATPase domain-containing protein	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23077 all species →	AAA-FAMILY ATPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0007031 all species →	Biological Process	peroxisome organization	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016558 all species →	Biological Process	protein import into peroxisome matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13338	PEX1; peroxin-1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.