Gene detail

Detailed information of PFX18565.1 in Stylophora pistillata

Genomic Location: Spis.scaffold404:41079...43469
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Rnf216

ATGTTACTTATTTTGATAGCTACTATTAAAAATTTGCGTGTGTTAAATGAGGATGTGAGTGGAATGTCATTTGAGGCGAGGATTTTGGATTCCTTGAGGCCCATATTCCCACAGTTGAATGACCACGTTTTAACGGAATGCATAAGGAAAGTTCAAGAAACCGTTGGAAGCGATCCAGCGACAATTGTACCGGGATGCGTTGACCTCCTCTTGAGTGGGACTATAAATGAAGAAAATTTCACTCCAAACAGATCAGTTCCGCCTGTGGCAAAACCAACAAACGAAAAACCAAATTCACTTGTTATAGAAGAAGACGAAGATGTAGTGTATATCTCGACAACGAGCCGAGTTCAGACAACGGCTGCAACCAGACTAGCACCAGTGATCATTGATAACATCGAAATTACTGCATACCACTCATCGTCTACCCCAAGAGGTGCATCTACCCTATTTCCGCTAAAAGTTGCCAGCAAGACAGAGGACCTGAGGCGAAATCTGCCGTTCGAAGGAGAGACTCGGGTTCCTTGTGCGCCATTTTCGCACATGTCGTCAGCGAATCTTCAAGATTCTAGTCGACATATTCAGAGTGGCCACGCTCAAACTCCTTTAGAACCCTCAGAAGCCATGAAAAACCTTTACTCTTTATTCCCTGATGTAAGAGATGATCATCTTCAAAGCTTGCTTAACAAGTGGTCGCACTTCCCTCAAGATGTGGCTATCAATTATGCTTGCAATGACTTGCTTGAGAACCGTGATTACCCTAAGAAATCATCCAAATTAAATAGTCCTTCAGGAACCAATACTCCCGGAAATGACTGTGTAGAGAAAGACTTCTTTAAAGACTTTTCAAGTCCAGTGTCATTGAAGTACCAAAACGAGTGCTTATGTTTACTTCAAAATGAATTCAGAAGGATTCCAAAGAAGCATATCAGGAAAGCATTGCAATTATTTCAATATCACTATGCACCAAGTAGAAGATATCTGCAGGAACAGCTTCAAATTTCTACAGATGGAGGTGCAACTGCTACAGTGACAGCTTGTCAACGCTCAAGTGCCGTGCCATCAGCCGCTGTAGATAAAACTTCTAATGTACTCAGCCACCAACCACCTAAAATTCAACTTCTTCGGTGTAGACACTCTACAGTACCACTAGATTACTCACACATGGATGAGGAACTTTTAAGGGAGATGGAATTTGTGAAAAAGTGTGATCTATCTAAAACTGCAGAGGAAGATCAATTATTTGCCTTAAGCTTAAATGACCAACAGTATGAAGAAGAAGGCCAGAAAATTGAATGTGGCTGTTGCTATGGAGATGCAGCCTTTGAAGATATGGTTCAGTGCCTGGATGGTCACCTTTTCTGTGCAAGTTGTCTGATGAACTATGCAAAGGAGGCTGCTTTTGGCCAAGGCAAGACTACTCTTGCGTGCATGAGTGATGGTTGTGAAGGCACATTTCCAATGAGTCAACTGAAGAAGGCATTACCAATTAAAATCCTGGAGAAATATGAGGATCGCGTGCAAGAGGAATCCCTTTCACTGGCCCAAATGGATGATTTTGTGCGGTGCCCTTTCTGTGATTTTGCAGCAATTTTGCCACTGGAAGAAAAAGTTTTTAAATGTCAGAATCCTTCTTGTGCTAAAGAAACTTGTCGCTACTGCAAAGAGGAATGGTCCGATCATTTTGGCTTAAAGTGTAATGAGGTTGAAAAATCAGCACAGAAGGATGTGAGGCTTTCATATGAAGAAAGGATGACAATGGCAAAAATAAGAAAATGCCCAAAGTGTGGGTGTGAGTTCACCAAATCAGATGGGTGCAACAAAATGACATGTCGGTGTGGAGCTACAATGTGCTATGTCTGCCGCAAGCCAAATATTCATTACAATCACTTTTGTCAGCACCCAAAAGATCCTGGAAAGCAATGCACAAATTGCAAAAGTTGTTTGCTGTGGAGTGATCCTTCAGAAGATGATAACCATGCAGTGAAAGAACTTGAGAAGGAAGCCCAAGAAGCGAAGAGGAAGTTTGAGGCAGAATCAGAGGACAACCCAGCTAAAAGGGTAAAGAATGGATAA

Transcript

rna-Spis17056_mrna

ATGTTACTTATTTTGATAGCTACTATTAAAAATTTGCGTGTGTTAAATGAGGATGTGAGTGGAATGTCATTTGAGGCGAGGATTTTGGATTCCTTGAGGCCCATATTCCCACAGTTGAATGACCACGTTTTAACGGAATGCATAAGGAAAGTTCAAGAAACCGTTGGAAGCGATCCAGCGACAATTGTACCGGGATGCGTTGACCTCCTCTTGAGTGGGActataaatgaagaaaatttcactCCAAACAGATCAGTTCCGCCTGTGGCAAAACCAACAAACGAAAAACCAAATTCACTTGTTATAGAAGAAGACGAAGATGTAGTGTATATCTCGACAACGAGCCGAGTTCAGACAACGGCTGCAACCAGACTAGCACCAGTGATCATTGATAACATCGAAATTACTGCATACCACTCATCGTCTACCCCAAGAGGTGCATCTACCCTATTTCCGCTAAAAGTTGCCAGCAAGACAGAGGACCTGAGGCGAAATCTGCCGTTCGAAGGAGAGACTCGGGTTCCTTGTGCGCCATTTTCGCACATGTCGTCAGCGAATCTTCAAGATTCTAGTCGACATATTCAGAGTGGCCACGCTCAAACTCCTTTAGAACCCTCAGAAGCCATGAAAAACCTTTACTCTTTATTCCCTGATGTAAGAGATGATCATCTTCAAAGCTTGCTTAACAAGTGGTCGCACTTCCCTCAAGATGTGGCTATCAATTATGCTTGCAATGACTTGCTTGAGAACCGTGATTACCCTAAGAAATCATCCAAATTAAATAGTCCTTCAGGAACCAATACTCCCGGAAATGACTGTGTAGAGAAAGACTTCTTTAAAGACTTTTCAAGTCCAGTGTCATTGAAGTACCAAAACGAGTGCTTATGTTTACTTCAAAATGAATTCAGAAGGATTCCAAAGAAGCATATCAGGAAAGCATTGCAATTATTTCAATATCACTATGCACCAAGTAGAAGATATCTGCAGGAACAGCTTCAAATTTCTACAGATGGAGGTGCAACTGCTACAGTGACAGCTTGTCAACGCTCAAGTGCCGTGCCATCAGCCGCTGTAGATAAAACTTCTAATGTACTCAGCCACCAACCACCTAAAATTCAACTTCTTCGGTGTAGACACTCTACAGTACCACTAGATTACTCACACATGGATGAGGAACTTTTAAGGGAGATGGAATTTGTGAAAAAGTGTGATCTATCTAAAACTGCAGAGgaagatcaattatttgccttaAGCTTAAATGACCAACAGTATGAAGAAGAAGGCCAGAAAATTGAATGTGGCTGTTGCTATGGAGATGCAGCCTTTGAAGATATGGTTCAGTGCCTGGATGGTCACCTTTTCTGTGCAAGTTGTCTGATGAACTATGCAAAGGAGGCTGCTTTTGGCCAAGGCAAGACTACTCTTGCGTGCATGAGTGATGGTTGTGAAGGCACATTTCCAATGAGTCAACTGAAGAAGGCATTACCAATTAAAATCCTGGAGAAATATGAGGATCGCGTGCAAGAGGAATCCCTTTCACTGGCCCAAATGGATGATTTTGTGCGGTGCCCTTTCTGTGATTTTGCAGCAATTTTGCCACTggaagaaaaagtttttaaatgTCAGAATCCTTCTTGTGCTAAAGAAACTTGTCGCTACTGCAAAGAGGAATGGTCCGATCATTTTGGCTTAAAGTGTAATGAGGTTGAAAAATCAGCACAGAAGGATGTGAGGCTTTCATATGAAGAAAGGATGACAATggcaaaaataagaaaatgccCAAAGTGTGGGTGTGAGTTCACCAAATCAGATGGGTGCAACAAAATGACATGTCGGTGTGGAGCTACAATGTGCTATGTCTGCCGCAAGCCAAATATTCATTACAATCACTTTTGTCAGCACCCAAAAGATCCTGGAAAGCAATGCACAAATTGCAAAAGTTGTTTGCTGTGGAGTGATCCTTCAGAAGATGATAACCATGCAGTGAAAGAACTTGAGAAGGAAGCCCAAGAAGCGAAGAGGAAGTTTGAGGCAGAATCAGAGGACAACCCAGCTAAAAGGGTAAAGAATGGATAAGAACTACAGCTGTAATGTTCGTGTAGATGTAGCTCCTTGAGGGCATGAATTATGGTAATGTGGTAATATGTAATTTATGCCATGGGGCAGTCTACTCAAGGAAGGATGTAGCTCTTTGAGGATATGAATTATGGGG

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

No Pfam domain signature was detected for PFX18565.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR047546 all species →	Domain	E3 ubiquitin-protein ligase RNF216, Rcat domain	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan
IPR003892 all species →	Domain	Ubiquitin system component CUE	Interproscan
IPR047545 all species →	Domain	E3 ubiquitin-protein ligase RNF216, BRcat domain	Interproscan
IPR002867 all species →	Domain	IBR domain	Interproscan
IPR051628 all species →	Family	Linear Ubiquitination-Associated E3 Ligases	Interproscan
IPR047544 all species →	Domain	E3 ubiquitin-protein ligase RNF216, RING finger, HC subclass	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22770 all species →	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0071797 all species →	Cellular Component	LUBAC complex	Interproscan
GO:0097039 all species →	Biological Process	protein linear polyubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11976	RNF216, TRIAD3; E3 ubiquitin-protein ligase RNF216	EC:2.3.2.31	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.